Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00476 ATGTGGCCCGGGGCGTCGAGGTCATTCAACCACAACCTTTCACCCCACCACGACATCTTCGTGGTGGCGCCCGCCTCGTCGTTCCATCACCACCACCACCACAACGACGCTGTTTTGTCCGATCCAAACAACAACAGTTCCAACGCAACTGCACTCGGCGTCAACGTCTTCCCTCTCCTCACCGCCACGCCATGCCTCACTCCAGAGAGCGAGGGCATAATGGGAAACATCAATAGCCACCGCAACAGAATTCAGCTATGGCAACCACAGGATTCACCACAGCACCAACACGCCGACGGCGTCCTTGCGAGTAACCACCGTAGCAGAATTCAGTTATGGCAAGAGCACGACGAGTCTCCGCCGCCGCAGCACCAGCAACAACAACACCCGAACGCGCACGTGCACGAGCGTGAGGGGAGTGGGAGCGGCGCGAGCACGTGCCAGGACTGTGGAAACCAGGCGAAAAAGGATTGTAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGCTACGCACGTGAAGAGCACGTGGGTACCCGCCGCGCGGCGGAGGGAGCGCCAGCTCATGGCGGCGACGGCAGCGGTTGGGTCCAGTGGGTCCACTTCCGCCACCAAGAAACCTAGGCTCGTGCCTTCCCAGACCACAACCACTTCGCACACTTCCACGTCTAATAACACCACCACTCCTCCTAGGAGTTTCGACACTGGTTCGAGCCACCAAGATGTGAGTTTCAAGGAGTCACTACCTTGTCAAGTGCGTGCACCAGCAGAGTTCAAGTGTGTTCGTGTGACTGCAGTGGACGATGGAGATGATGAGTATGCATATCAAGCTGTGGTGAAAATTGGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAAGATAAAAGTGAGTATCCTAATCTATCTGAATTGCATTTGGGTGGTGGTGGAAATGTTGCAAGTGGAAGTGATGGAGGTGGTAGAAATGGAGTTTCTTCTTCATCTCCAATGGTGGATCCTTCTGATGTCTATGCAGCTTCTGCTGGAGTGTTACTTGGAGGTTCATCAAACTATGGTAATGCAATAAATTAA 1095 0.5416 MWPGASRSFNHNLSPHHDIFVVAPASSFHHHHHHNDAVLSDPNNNSSNATALGVNVFPLLTATPCLTPESEGIMGNINSHRNRIQLWQPQDSPQHQHADGVLASNHRSRIQLWQEHDESPPPQHQQQQHPNAHVHEREGSGSGASTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAATAAVGSSGSTSATKKPRLVPSQTTTTSHTSTSNNTTTPPRSFDTGSSHQDVSFKESLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEDKSEYPNLSELHLGGGGNVASGSDGGGRNGVSSSSPMVDPSDVYAASAGVLLGGSSNYGNAIN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00476 364 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 26 348 IPR007818 GO:0003700|GO:0006355
Viun6g00476 364 MobiDBLite consensus disorder prediction 116 151 - -
Viun6g00476 364 Pfam Domain of unknown function (DUF702) 144 301 - -
Viun6g00476 364 MobiDBLite consensus disorder prediction 317 338 - -
Viun6g00476 364 MobiDBLite consensus disorder prediction 198 245 - -
Viun6g00476 364 NCBIfam putative zinc finger domain, LRP1 type 146 188 IPR006510 -
Viun6g00476 364 MobiDBLite consensus disorder prediction 196 245 - -
Viun6g00476 364 NCBIfam LRP1 C-terminal domain 253 300 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00476 Viun-Chr6 12467239 12470332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00476 18 344 C2H2 Transcription Factor Family AT5G12330 49.558 4.75e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun6g00476 DUF702 5.7e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00476 - - gmx:100816514 459.529