Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun6g00471 | ATGACTTCCTCACTCGTGAAGATCATCCAAGGCGAACAGGTCCTCACCAACGATTTTCAGGACCTTACAATCAAAGATCTGAGTGAGAAAGGGAGCGAGACAGTGATTCACGAGGTGGGTAATGGAAGTCATGGGGGAATCTGTGCTATTTGTCTGGATGAAATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAACACGCTTACTGTGTAACATGCATTCTTCGATGGGCTACGTACCGTGAGAAAGTTACTTGTCCTCAATGTAAACATCCATTCGAGTTTCTCAATATTCATCGCATGCTTGATGGCAGCATTCAAGATTACATGTTTGAGGAGAGTGTTTGTCTGCTACTCCGGGCCTCATGGTTCAAACCTTTATCAGTTGAAGAACACGTGGTTCACGAAGATGCATACGAGGAACTAGGAGATTACTATCAGTACGAGTATGAGGACGAGGATGTGGACGATGATATGGATGAAGCTTATTATGGTGGTTCGTCTAGTTTTCGTATCGGCAACCGTCGATGGGGAGATAACGGCTACGTGAGGGCTGGCCGACAAGAAGCTCGGCCGGCTAACAGATCGAACTTCCAGGATTCAGGAGCAAGCTCTTCGAGAGAGCCAAAGAAGAAAGAGGTTGGGAAAAGTAGCACAGGCAGAAGGGCAAAGAGGGCACAGAAAAGGGAAGCTGCTGATAAGGCTGCTGAAGCAAAACATCAGCAGCATTTGGTAAGGCTGGGTAGGAAGTGA | 756 | 0.4709 | MTSSLVKIIQGEQVLTNDFQDLTIKDLSEKGSETVIHEVGNGSHGGICAICLDEIVLQETALVKGCEHAYCVTCILRWATYREKVTCPQCKHPFEFLNIHRMLDGSIQDYMFEESVCLLLRASWFKPLSVEEHVVHEDAYEELGDYYQYEYEDEDVDDDMDEAYYGGSSSFRIGNRRWGDNGYVRAGRQEARPANRSNFQDSGASSSREPKKKEVGKSSTGRRAKRAQKREAADKAAEAKHQQHLVRLGRK | 251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun6g00471 | 251 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 9 | 251 | - | - | |
| Viun6g00471 | 251 | SUPERFAMILY | RING/U-box | 47 | 97 | - | - | |
| Viun6g00471 | 251 | Coils | Coil | 222 | 242 | - | - | |
| Viun6g00471 | 251 | Pfam | Ring finger domain | 48 | 91 | IPR001841 | - | |
| Viun6g00471 | 251 | SMART | ring_2 | 48 | 90 | IPR001841 | - | |
| Viun6g00471 | 251 | ProSitePatterns | Zinc finger RING-type signature. | 66 | 75 | IPR017907 | - | |
| Viun6g00471 | 251 | CDD | RING-HC_Topors | 48 | 94 | - | - | |
| Viun6g00471 | 251 | MobiDBLite | consensus disorder prediction | 187 | 251 | - | - | |
| Viun6g00471 | 251 | MobiDBLite | consensus disorder prediction | 206 | 244 | - | - | |
| Viun6g00471 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 115 | IPR013083 | - | |
| Viun6g00471 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 48 | 91 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun6g00471 | 3 | 251 | C3H Transcription Factor Family | AT5G19430 | 56.757 | 2.87e-90 | 265 |