Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00467 ATGAGAAACAATTCCCCTAAAATCTATGACTTAGACTCTACTTCTTCTCAAGATGAGGACACTAACTCCTCATTCCAACAAGGTCAACCACAAGAAGCCACCGCCGCCAATGAACCTCGTACCACCAAATCTGGAAGGAGGCCACGTGGTAGGCCTGTCGGGTCAAGAAACAAGCCAAAACCTAGCTCTCTCCGAGTGCCAGAAACCACAGATTCAACTATGAATGTCTTCACTTTCAATGTGGCTCCAAATGGAGACATCATGGAGTCTATTCTTGAGATTGTTCACAGGGACCAAGTTAGTGTCACTGTTATGAATGTTTCTGGCATGATCAACAACGTGACCATGGAAGCTTCAAATGAGGGTTCACCACCCATCATGCTCTATGGGCCCTTCAACTTCCTCTCCCTCACTGGATCCTACTTGTACGACAACCACTACATTCTTCACCCCGGTGCCACCCCTCCCCCTCCTCCATCCTTTGGGATCCATCTCTCCACCGCTCAAGGACAGGTTTTCAGTGGCATCATCGGTGGCAGAGTCATTGCTGGTGAGAATGTCATGATCACTGTCTCCACATTTAGGAACCCTGACATTTTGAAGTACACTCCTGAAGATCGACAAGAGGATGAACTTGACAACAACACTGATAACAACAGTCCTGGGGGTTTTTGTGGTGGTGGTGACTTCATGGGGTTCAACCCAAGTTCTGGAATCCCTGGATTTGGTTGA 732 0.4781 MRNNSPKIYDLDSTSSQDEDTNSSFQQGQPQEATAANEPRTTKSGRRPRGRPVGSRNKPKPSSLRVPETTDSTMNVFTFNVAPNGDIMESILEIVHRDQVSVTVMNVSGMINNVTMEASNEGSPPIMLYGPFNFLSLTGSYLYDNHYILHPGATPPPPPSFGIHLSTAQGQVFSGIIGGRVIAGENVMITVSTFRNPDILKYTPEDRQEDELDNNTDNNSPGGFCGGGDFMGFNPSSGIPGFG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00467 243 CDD DUF296 75 184 IPR005175 -
Viun6g00467 243 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 195 IPR005175 -
Viun6g00467 243 FunFam AT-hook motif nuclear-localized protein 17 73 210 - -
Viun6g00467 243 ProSiteProfiles PPC domain profile profile. 71 215 IPR005175 -
Viun6g00467 243 Gene3D - 73 217 - -
Viun6g00467 243 MobiDBLite consensus disorder prediction 1 71 - -
Viun6g00467 243 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 207 - -
Viun6g00467 243 MobiDBLite consensus disorder prediction 1 41 - -
Viun6g00467 243 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 215 IPR014476 GO:0003680
Viun6g00467 243 MobiDBLite consensus disorder prediction 201 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00467 Viun-Chr6 12241627 12242358 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00467 46 238 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 29.412 1.20e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00467 - - vun:114188422 468.003