LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g00466	ATGATGAGTGATGTTGCTTCTTCCTCTAACTCTTCTAAAAAATATGATGTTTTTCTAAGCTTTCGAGGTGAGGACACTCGCATGAACTTCACAAGCCATCTTCATGAGGTTTTGAAGCAAAAGAAGGTAGAAACCTATATTGACTACCGGCTTGAGAAGGGAGATGAAATCTCACCGGCACTCATCAAAGCAATCGAAGATTCTCATGTCTCTATTGTGATCATCTCTGAGAATTATGCTTTCTCAAAGTGGTGCTTAGAAGAACTCAGCAAGATTCTTGAATGTCGGAAAATCCAAGGACAAATTGTGATTCCAGTGTTTTACAACATAGACCCATCTCATGTGAGGAAGCAAACTGGGAGCTATGAGCAAGCCTTTGTAAAACACCAGGAAGACTTCAGGTGCAACAAATGGAGAGCTGCTCTTGCTGAAGTAGCCAATTTTTCTGGGTGGGATTCTCGAAACAGGATTGAATCTGAGCTCCTTATGGACATTGTTGGAGACATTTTGCGAAAACTGACTGCTAGATACCCAACCCAACTTAAAGGGCTGGTTGGAATTGAAGAAAATTATGAACAAATTGAATCATTACTAAGAATTGGGTCAAGAGAAGTTAGAACCCTGGGAATATGGGGCATGGGTGGCATAGGAAAGACCACCCTTGCTACTGCTTTGTATGCCAAATTTTCTCCCGAGTTCGAAGGTGGTTGCTTCCTCACAAATGTAAGGGAAAATTCAAGTAGGCAAGGTGGACTTGAAGCTTTACGCAGTAAACTTTTTACTGAGTTGTTAGAGAATGAAAATCATTGTTTTGGTTCACCCCTTTTAGTACCTCAGTTTGTCATGAGTAGGCTTGGACATAAAAAGGTCTTCATTGTATTGGATGATGTGGCTACCTCAGAGCAATTAGAATGTCTCATTATAGATTATGGTTTGTTGGGACCAGGAAGTAGAATCATTGTTACAACTAGAGACAAACAAATTTTTAGACCAAATGATGAGATATATGAGGTCAAGGAATTGAGTATTTATCACTCTCTCGAACTTTTCAGTTTGACTGCTTTTGAAGAAAAAATACCTAAACAAGGATACGAAGATTTATCAAGAAGAGCAATTTCCTATTGCAAAGGTATTCCTCTGGCTTTAAAAGTTCTTGGTGCAAGCTTATGTCGAAGAAGTAAAGAGGCATGGGTAAGTGAATTGAGAAAACTCAAGAAGATTTCAAATATGGAAATTCATAATGTATTAAAGTTAAGTTATGATGGCTTAGATCGTTCTCAAAAGGACATACTTTTAGACATTGCATGCTTCTTGAAAGGAGAACATAAAGATCGGGTCACAAATCTATTGGAAGCTTGTGATTTCTTTGCAGCATCTGGAATAGAAGTTCTTTTAGATAAAGCACTGGTAACAATTTCATATTCCAATAATATACAAATGCATGATTTAATACAAGAAATGGGTCAAGAAATTGTTGATCAAGAATCTATCAAAGACTCTGGAAGGCGAAGTCGATTGTGGAGACCTGAGGAAGTGCATCAAGTGTTAAAACATAACTTGGGAACTGAAGTTGTTGAAGCCATAACTTTAGATACGTGTGATTTAAACAGGGATCTAAATTTGAGCTCTAATTCCTTTACAAAGATGGTTAGCATGAGATTTCTTAAAATCCATTCTTCATACTACTCAAGCCAATTTAATGTGCACCTTCCTAGCGGTCTGGAGTCACTGTCTGATAAATTGAGGTATTTTCGTTGGGATGGATTTTGTCACGAGTCTTTGTCGTCCAATTTTCATGCAGAATATCTTGTTGAGCTTGACATGCGTCGTAGCAAGCTTAGAAAGCTTTGGGAAGGTGTTCAGAGCCTGGTGAACTTGGAGAAAATTCACCTAGAAGCCTCTCGAGATCTGGTTGAGATTCCAGACTTATCTAAGGCAGAAAAACTTAAAAGAATTGACCTCTCTGATTGTGAAAGCTTGCGTAAGCTCCACCCTTCCATATCATCCCTCCCCAAGCTTGCACATTTGGAATTAAGTGGCTGTAGAAAGATTGAAAATCTGAATGTTCATTCAAAATATCTGCAGAGATTGAACCTCGAAGGTTGTTCATCTCTTAAGGAGTTGTCAGTGACATCACATAAAATGGTGTTCTTGGACTTATCTTATACTGCTATATGTTCGTTGCCATCATCAATTCAATATAATACGGAACTTGCTCGACTTTTTCTAAAGGGTTGCGACAATCTATCATTCGTACAATCACCCCCTAACATCATTGGCCACTTGTTCTCTTTACTACTTTTAGACTTGAGTGGAACTAATGTGGAGAGTTTACCTGCAAGCATAAAAAACCTTTCAATGATGAAACTATTGGTGTTAGATGATTGCAGGACACTCGTGTCTCTACCGGAGCTTCCACGATCCTTGGAAATGCTGACAGCCTATAACTGCACTTCTTTGGAGACAGTCTTCACTCAATTACTAGTTTCTGAACACATGTTACAGAGTTGCAAGCCCTACTTATCCAAACAATATTATTATCCTAAGCAATTTGAGGGTGGATGTGCCGTTTTCCCTGGAGATCATATCATGAATGACTTTGGATTTCATGCTGAAGATAGTTCAATAACTATTCCTTATCTCTCACTACCTGAGTTGTGTGGTTTCATTTGTTGTTTCGTTCTTTCTGAGGGATCAATAGAGGGACATATTTCGTGTTCTATCTATCAAGATAGCGAACAAGTTGGGATAGACGAAGGCCAACTACTTCACACAGCTTTAATATCAGATCACGTGGTATTTTTGTTTGTTGAAATATGTGACCATTTTAATGGAATACCTTTTAAGTTTCAATTTAATTACTATGACATCTTTCGACAGAAAGACGAACGAGTTAGAATCAAAGAGTGTGGAGTCTTCCCAGTGTATGCCTCAGAATCCGGGTTAAAGTTGTTTGGTAGTGATAGCACTGAATTCTTTGAACTGGAATCTATTACTCAAAGCTTCGATGAGTCACAATCCAGAGCAATTGGAGTTGGAGTTAGATGCACGAACGGTGAAAATGGATTAGAATCCTTCGTTGAAGTATCTAATAAAGAGTCACAGCTCAGAGAGATAGGAGTTGGTGGATCAAGTAATGAAAATGAAAATGAATGGGAACACCTTCTTCATGTGATTACTTCATCGGTTTTCTTTTGA	3198	0.384	MMSDVASSSNSSKKYDVFLSFRGEDTRMNFTSHLHEVLKQKKVETYIDYRLEKGDEISPALIKAIEDSHVSIVIISENYAFSKWCLEELSKILECRKIQGQIVIPVFYNIDPSHVRKQTGSYEQAFVKHQEDFRCNKWRAALAEVANFSGWDSRNRIESELLMDIVGDILRKLTARYPTQLKGLVGIEENYEQIESLLRIGSREVRTLGIWGMGGIGKTTLATALYAKFSPEFEGGCFLTNVRENSSRQGGLEALRSKLFTELLENENHCFGSPLLVPQFVMSRLGHKKVFIVLDDVATSEQLECLIIDYGLLGPGSRIIVTTRDKQIFRPNDEIYEVKELSIYHSLELFSLTAFEEKIPKQGYEDLSRRAISYCKGIPLALKVLGASLCRRSKEAWVSELRKLKKISNMEIHNVLKLSYDGLDRSQKDILLDIACFLKGEHKDRVTNLLEACDFFAASGIEVLLDKALVTISYSNNIQMHDLIQEMGQEIVDQESIKDSGRRSRLWRPEEVHQVLKHNLGTEVVEAITLDTCDLNRDLNLSSNSFTKMVSMRFLKIHSSYYSSQFNVHLPSGLESLSDKLRYFRWDGFCHESLSSNFHAEYLVELDMRRSKLRKLWEGVQSLVNLEKIHLEASRDLVEIPDLSKAEKLKRIDLSDCESLRKLHPSISSLPKLAHLELSGCRKIENLNVHSKYLQRLNLEGCSSLKELSVTSHKMVFLDLSYTAICSLPSSIQYNTELARLFLKGCDNLSFVQSPPNIIGHLFSLLLLDLSGTNVESLPASIKNLSMMKLLVLDDCRTLVSLPELPRSLEMLTAYNCTSLETVFTQLLVSEHMLQSCKPYLSKQYYYPKQFEGGCAVFPGDHIMNDFGFHAEDSSITIPYLSLPELCGFICCFVLSEGSIEGHISCSIYQDSEQVGIDEGQLLHTALISDHVVFLFVEICDHFNGIPFKFQFNYYDIFRQKDERVRIKECGVFPVYASESGLKLFGSDSTEFFELESITQSFDESQSRAIGVGVRCTNGENGLESFVEVSNKESQLREIGVGGSSNENENEWEHLLHVITSSVFF	1065

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g00466	1065	ProSiteProfiles	TIR domain profile.	13	173	IPR000157	GO:0007165
	Viun6g00466	1065	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	434	IPR027417	-
	Viun6g00466	1065	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	151	IPR035897	-
	Viun6g00466	1065	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	709	IPR044974	GO:0006952
	Viun6g00466	1065	Gene3D	-	174	335	IPR027417	-
	Viun6g00466	1065	PRINTS	Disease resistance protein signature	207	222	-	-
	Viun6g00466	1065	PRINTS	Disease resistance protein signature	284	298	-	-
	Viun6g00466	1065	PRINTS	Disease resistance protein signature	375	389	-	-
	Viun6g00466	1065	PRINTS	Disease resistance protein signature	644	660	-	-
	Viun6g00466	1065	Gene3D	-	341	424	IPR042197	-
	Viun6g00466	1065	SUPERFAMILY	L domain-like	479	822	-	-
	Viun6g00466	1065	Pfam	NB-ARC domain	194	407	IPR002182	GO:0043531
	Viun6g00466	1065	Gene3D	-	8	173	IPR035897	-
	Viun6g00466	1065	Gene3D	Ribonuclease Inhibitor	493	713	IPR032675	-
	Viun6g00466	1065	FunFam	Disease resistance protein (TIR-NBS-LRR class)	11	175	-	-
	Viun6g00466	1065	Pfam	TIR domain	14	183	IPR000157	GO:0007165
	Viun6g00466	1065	Pfam	Leucine Rich Repeat	602	621	IPR011713	-
	Viun6g00466	1065	Gene3D	Ribonuclease Inhibitor	714	844	IPR032675	-
	Viun6g00466	1065	SMART	till_3	14	148	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g00466	Viun-Chr6	12198452	12204146	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g00466	10	816	WRKY Transcription Factor Family	AT4G12020	34.348	6.55e-112	380

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g00466	-		-	gmx:100813283	1210.28