Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00465 ATGATGAGTGATGTTGCTTCTTCCTCTAACTCTTCTAAAAAATATGATGTTTTTCTAAGCTTTCGAGGTGAGGACACTCGCATGAACTTCACAAGCCATCTTCATGAGGTTTTGAAGCAAAAGAAGGTAGAAACCTATATTGACTACCGGCTTGAGAAGGGAGATGAAATCTCACCGGCACTCATCAAAGCAATCGAAGATTCTCATGTCTCTATTGTGATCATCTCTGAGAATTATGCTTTCTCAAAGTGGTGCTTAGAAGAACTCAGCAAGATTCTTGAATGTCGGAAAATCCAAGGACAAATTGTGATTCCAGTGTTTTACAACATAGACCCATCTCATGTGAGGAAGCAAACTGGGAGCTATGAGCAAGCCTTTGTAAAACACCAGGAAGACTTCAGGTGCAACAAATGGAGAGCTGCTCTTGCTGAAGTAGCCAATTTTTCTGGGTGGGATTCTCGAAACAGGATTGAATCTGAGCTCCTTATGGACATTGTTGGAGACATTTTGCGAAAACTGACTGCTAGATACCCAACCCAACTTAAAGGGCTGGTTGGAATTGAAGAAAATTATGAACAAATTGAATCATTACTAAGAATTGGGTCAAGAGAAGTTAGAACCCTGGGAATATGGGGCATGGGTGGCATAGGAAAGACCACCCTTGCTACTGCTTTGTATGCCAAATTTTCTCCCGAGTTCGAAGGTGGTTGCTTCCTCACAAATGTAAGGGAAAATTCAAGTAGGCAAGGTGGACTTGAAGCTTTACGCAGTAAACTTTTTACTGAGTTGTTAGAGAATGAAAATCATTGTTTTGGTTCACCCCTTTTAGTACCTCAGTTTGTCATGAGTAGGCTTGGACATAAAAAGGTCTTCATTGTATTGGATGATGTGGCTACCTCAGAGCAATTAGAATGTCTCATTATAGATTATGGTTTGTTGGGACCAGGAAGTAGAATCATTGTTACAACTAGAGACAAACAAATTTTTAGACCAAATGATGAGATATATGAGGTCAAGGAATTGAGTATTTATCACTCTCTCGAACTTTTCAGTTTGACTGCTTTTGAAGAAAAAATACCTAAACAAGGATACGAAGATTTATCAAGAAGAGCAATTTCCTATTGCAAAGGTATTCCTCTGGCTTTAAAAGTTCTTGGTGCAAGCTTATGTCGAAGAAGTAAAGAGGCATGGGTAAGTGAATTGAGAAAACTCAAGAAGATTTCAAATATGGAAATTCATAATGTATTAAAGTTAAGTTATGATGGCTTAGATCGTTCTCAAAAGGACATACTTTTAGACATTGCATGCTTCTTGAAAGGAGAACATAAAGATCGGGTCACAAATCTATTGGAAGCTTGTGATTTCTTTGCAGCATCTGGAATAGAAGTTCTTTTAGATAAAGCACTGGTAACAATTTCATATTCCAATAATATACAAATGCATGATTTAATACAAGAAATGGGTCAAGAAATTGTTGATCAAGAATCTATCAAAGACTCTGGAAGGCGAAGTCGATTGTGGAGACCTGAGGAAGTGCATCAAGTGTTAAAACATAACTTGGGAACTGAAGTTGTTGAAGCCATAACTTTAGATACGTGTGATTTAAACAGGGATCTAAATTTGAGCTCTAATTCCTTTACAAAGATGGTTAGCATGAGATTTCTTAAAATCCATTCTTCATACTACTCAAGCCAATTTAATGTGCACCTTCCTAGCGGTCTGGAGTCACTGTCTGATAAATTGAGGTATTTTCGTTGGGATGGATTTTGTCACGAGTCTTTGTCGTCCAATTTTCATGCAGAATATCTTGTTGAGCTTGACATGCGTCGTAGCAAGCTTAGAAAGCTTTGGGAAGGTGTTCAGAGCCTGGTGAACTTGGAGAAAATTCACCTAGAAGCCTCTCGAGATCTGGTTGAGATTCCAGACTTATCTAAGGCAGAAAAACTTAAAAGAATTGACCTCTCTGATTGTGAAAGCTTGCGTAAGCTCCACCCTTCCATATCATCCCTCCCCAAGCTTGCACATTTGGAATTAAGTGGCTGTAGAAAGATTGAAAATCTGAATGTTCATTCAAAATATCTGCAGAGATTGAACCTCGAAGGTTGTTCATCTCTTAAGGAGTTGTCAGTGACATCACATAAAATGGTGTTCTTGGACTTATCTTATACTGCTATATGTTCGTTGCCATCATCAATTCAATATAATACGGAACTTGCTCGACTTTTTCTAAAGGGTTGCGACAATCTATCATTCGTACAATCACCCCCTAACATCATTGGCCACTTGTTCTCTTTACTACTTTTAGACTTGAGTGGAACTAATGTGGAGAGTTTACCTGCAAGCATAAAAAACCTTTCAATGATGAAACTATTGGTGTTAGATGATTGCAGGACACTCGTGTCTCTACCGGAGCTTCCACGATCCTTGGAAATGCTGACAGCCTATAACTGCACTTCTTTGGAGACAGTCTTCACTCAATTACTAGTTTCTGAACACATGTTACAGAGTTGCAAGCCCTACTTATCCAAACAATATTATTATCCTAAGCAATTTGAGGGTGGATGTGCCGTTTTCCCTGGAGATCATATCATGAATGACTTTGGATTTCATGCTGAAGATAGTTCAATAACTATTCCTTATCTCTCACTACCTGAGTTGTGTGGTTTCATTTGTTGTTTCGTTCTTTCTGAGGGATCAATAGAGGGACATATTTCGTGTTCTATCTATCAAGATAGCGAACAAGTTGGGATAGACGAAGGCCAACTACTTCACACAGCTTTAATATCAGATCACGTGAAAGACGAACGAGTTAGAATCAAAGAGTGTGGAGTCTTCCCAGTGTATGCCTCAGAATCCGGGTTAAAGTTGTTTGGTAGTGATAGCACTGAATTCTTTGAACTGGAATCTATTACTCAAAGCTTCGATGAGTCACAATCCAGAGCAATTGGAGTTGGAGTTAGATGCACGAACGGTGAAAATGGATTAGAATCCTTCGTTGAAGTATCTAATAAAGAGTCACAGCTCAGAGAGATAGGAGTTGGTGGATCAAGTAATGAAAATGAAAATGAATGGGAACACCTTCTTCATGTGATTACTTCATCGGTTTTCTTTTGA 3114 0.3873 MMSDVASSSNSSKKYDVFLSFRGEDTRMNFTSHLHEVLKQKKVETYIDYRLEKGDEISPALIKAIEDSHVSIVIISENYAFSKWCLEELSKILECRKIQGQIVIPVFYNIDPSHVRKQTGSYEQAFVKHQEDFRCNKWRAALAEVANFSGWDSRNRIESELLMDIVGDILRKLTARYPTQLKGLVGIEENYEQIESLLRIGSREVRTLGIWGMGGIGKTTLATALYAKFSPEFEGGCFLTNVRENSSRQGGLEALRSKLFTELLENENHCFGSPLLVPQFVMSRLGHKKVFIVLDDVATSEQLECLIIDYGLLGPGSRIIVTTRDKQIFRPNDEIYEVKELSIYHSLELFSLTAFEEKIPKQGYEDLSRRAISYCKGIPLALKVLGASLCRRSKEAWVSELRKLKKISNMEIHNVLKLSYDGLDRSQKDILLDIACFLKGEHKDRVTNLLEACDFFAASGIEVLLDKALVTISYSNNIQMHDLIQEMGQEIVDQESIKDSGRRSRLWRPEEVHQVLKHNLGTEVVEAITLDTCDLNRDLNLSSNSFTKMVSMRFLKIHSSYYSSQFNVHLPSGLESLSDKLRYFRWDGFCHESLSSNFHAEYLVELDMRRSKLRKLWEGVQSLVNLEKIHLEASRDLVEIPDLSKAEKLKRIDLSDCESLRKLHPSISSLPKLAHLELSGCRKIENLNVHSKYLQRLNLEGCSSLKELSVTSHKMVFLDLSYTAICSLPSSIQYNTELARLFLKGCDNLSFVQSPPNIIGHLFSLLLLDLSGTNVESLPASIKNLSMMKLLVLDDCRTLVSLPELPRSLEMLTAYNCTSLETVFTQLLVSEHMLQSCKPYLSKQYYYPKQFEGGCAVFPGDHIMNDFGFHAEDSSITIPYLSLPELCGFICCFVLSEGSIEGHISCSIYQDSEQVGIDEGQLLHTALISDHVKDERVRIKECGVFPVYASESGLKLFGSDSTEFFELESITQSFDESQSRAIGVGVRCTNGENGLESFVEVSNKESQLREIGVGGSSNENENEWEHLLHVITSSVFF 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00465 1037 ProSiteProfiles TIR domain profile. 13 173 IPR000157 GO:0007165
Viun6g00465 1037 Gene3D - 341 424 IPR042197 -
Viun6g00465 1037 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 709 IPR044974 GO:0006952
Viun6g00465 1037 Pfam TIR domain 14 183 IPR000157 GO:0007165
Viun6g00465 1037 Gene3D Ribonuclease Inhibitor 493 713 IPR032675 -
Viun6g00465 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 434 IPR027417 -
Viun6g00465 1037 Pfam Leucine Rich Repeat 602 621 IPR011713 -
Viun6g00465 1037 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 151 IPR035897 -
Viun6g00465 1037 Gene3D - 174 335 IPR027417 -
Viun6g00465 1037 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 175 - -
Viun6g00465 1037 Gene3D - 8 173 IPR035897 -
Viun6g00465 1037 SUPERFAMILY L domain-like 479 822 - -
Viun6g00465 1037 Pfam NB-ARC domain 194 407 IPR002182 GO:0043531
Viun6g00465 1037 Gene3D Ribonuclease Inhibitor 714 844 IPR032675 -
Viun6g00465 1037 PRINTS Disease resistance protein signature 207 222 - -
Viun6g00465 1037 PRINTS Disease resistance protein signature 375 389 - -
Viun6g00465 1037 PRINTS Disease resistance protein signature 284 298 - -
Viun6g00465 1037 PRINTS Disease resistance protein signature 644 660 - -
Viun6g00465 1037 SMART till_3 14 148 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00465 Viun-Chr6 12198452 12204146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00465 10 816 WRKY Transcription Factor Family AT4G12020 34.348 2.59e-112 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00465 - - gmx:100813283 1194.87