Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00462 ATGGGAAATACTTGTGCCAAAGGAAAACCGATTGCTCATGTATCTTCCTCCAATTTTTCTGGAAGTAAGAGGCCTGCAAGTAAGCCAAGGCAGTATTCAAATTCTTCTGCTCAAAATCAAGCTCCAAAATCTTCAGAATCAATTGTTACCGCATCCATCTCTAGTAGCCTAAAGTCCTTCAGCTTGAATGATCTAAAGGAGGCCACTAAGAATTTCAGGAGAGAAAATTTGATCGGAGAGGGAGGATTTGGGCGTGTCTTCAAAGGATGGATTGATGAGAACACATATGGCCCCACAAAACCAGGCACCGGAATTGTGGTGGCCATTAAAAATCTTAAACCAGAAAGCTTCCAAGGCCACAAGGAATGGCTTGCAGAAGTCAGTTATCTTGGGCAGCATCAGCATGACAATTTGGTGAAACTTATTGGTTATTGTTTGGAAGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAGAATCATCTATTCAGAAAAGGTGTTCAACCTATGGCTTGGGTTACAAGGGTCAACATTGCAATTGGTGTAGCAAGAGGACTAGCGTTCTTACATTCCCTGGATCAAAATGTCATCTTTCGTGATTTGAAGGCTTCCAATATCCTACTTGATTCAGACTTCAATGCAAAGCTTTCAGATTTTGGCTTGGCAAGGGATGGTCCAACCGGAGATAATACTCACGTTTCAACTCGAGTAATAGGAACTCAAGGCTATGCTGCACCAGAGTATGTTGCTACAGGTCACCTGGCACCAAGGAGTGATGTATACAGCTTTGGTGTGGTGTTGTTAGAGTTGCTTACTGGTAGGCGTGCTGTGGAAGATGACAGACCTGGATTTTCAGATGAAACTTTGGTGGATTGGGCAAAGCCATTTTTGAGTGACAACAGAAGAGTTTTGAGAATAATGGACACAAGGTTGGGGGGTCAATACTCTAAGAAAGGGGCAATGGCTGCAGCTGCACTTGCACTGCAATGTCTCAACACTGACCCCAAATTTAGACCCCCTATGGTGGAAGTTCTAGCAGCATTGGAAGTGCTTAATTCCTCAAACTCATTCACAAGAACACCACCAAGACCTGAGAGCCATGCAACCAAAAATCCTGCTGGCCATTCTCAAAAGTAA 1152 0.4332 MGNTCAKGKPIAHVSSSNFSGSKRPASKPRQYSNSSAQNQAPKSSESIVTASISSSLKSFSLNDLKEATKNFRRENLIGEGGFGRVFKGWIDENTYGPTKPGTGIVVAIKNLKPESFQGHKEWLAEVSYLGQHQHDNLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGVARGLAFLHSLDQNVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLAPRSDVYSFGVVLLELLTGRRAVEDDRPGFSDETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAMAAAALALQCLNTDPKFRPPMVEVLAALEVLNSSNSFTRTPPRPESHATKNPAGHSQK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00462 383 Pfam Protein tyrosine and serine/threonine kinase 75 351 IPR001245 GO:0004672|GO:0006468
Viun6g00462 383 Gene3D Transferase(Phosphotransferase) domain 1 158 371 - -
Viun6g00462 383 CDD STKc_IRAK 78 354 - -
Viun6g00462 383 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Viun6g00462 383 SMART serkin_6 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00462 383 FunFam Serine/threonine-protein kinase BIK1 37 157 - -
Viun6g00462 383 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 158 366 - -
Viun6g00462 383 Gene3D Phosphorylase Kinase; domain 1 47 157 - -
Viun6g00462 383 MobiDBLite consensus disorder prediction 1 47 - -
Viun6g00462 383 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00462 383 MobiDBLite consensus disorder prediction 360 383 - -
Viun6g00462 383 PANTHER OS01G0588500 PROTEIN-RELATED 39 356 - -
Viun6g00462 383 MobiDBLite consensus disorder prediction 10 47 - -
Viun6g00462 383 SUPERFAMILY Protein kinase-like (PK-like) 45 356 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00462 Viun-Chr6 12165729 12168231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00462 34 359 Glycoside Hydrolase AT3G07070 47.416 2.43e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun6g00462 PK_Tyr_Ser-Thr 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00462 - - vum:124843429 721.465