Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00461 ATGTTGCTGATGCAAAGAGTCATGGGGAGCAAGACAAAAATATACATTATTTTAGAGTTTGTGACTGGGGGAGAGCTTTTTCATAAAATACTAAACAGTGGACGAATGAGGGAAAAGGAAGCACGCAGATATTTCCAGCAGCTTATAAATGCCGTTGACTATTGCCATAGTAGAGGTGTCTACCACAGAGACCTGAAATTAGAGAACTTACTATTAGATTCTTTCGGGAACCTTAAAATTTCTGATTTTGGATTGAGTGCACTTTCCCAACAAGTCAGGGATGATGGACTGCTTCATACAACATGTGGAACTCCAAATTATGTTGCTCCTGAGGTCCTTAATGATGGAGGCTATGATGGGGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGCTACTTGCCTTTTGATGACACTAATATTCTGAACCTGTATAAAAAAATATCAGCTGCTGAATTTACTTGCCCCCCTTGGCTTTCTTTTAGTGCCAGGAAATTGATAACTAGAATCTTAAATCCCAACCCCGTGACTCGTATCACTGTATCGGAGATTCTGCGTGATGAATGGTTTAAAAAAGAATACAAACTTCCAGTTTTTGAGGAGACAAAGGAGAGAAACACTGATGACATTGAGGCCATCTTTAAAGACAGTGAAGTACACAATGTAAGAGAGAAGGAAGATCAGCCAACACCTATGAATGCATTTGAATTGATATCCTTGTCCAAAGGGCTGAACCTAGAAAACTTGTTTGACGTAGACCAGGGGTTTAAAAGAGAAATAAGGTTCACATCAAAATGCTCTGCCAATGAGATAATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGTTTTGATGTGCTGAAGAAAAATTTCAAGATGAAGCTTAAAAATGTGAAAGCTGGAAGGAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAGGTGGCACCTTCTCTTCACGTAGTTAAGATTAATAAAGCTAAAGGTGATACATTGGAGTTCCTTAAGTTCTACAACAATCTTTCAACACGCTTGGAGGATGTTGTTTGGAAAAATGAAGATGACATGGACGATGCGAAGTGA 1101 0.3933 MLLMQRVMGSKTKIYIILEFVTGGELFHKILNSGRMREKEARRYFQQLINAVDYCHSRGVYHRDLKLENLLLDSFGNLKISDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDGGYDGAAADLWSCGVILFVLLAGYLPFDDTNILNLYKKISAAEFTCPPWLSFSARKLITRILNPNPVTRITVSEILRDEWFKKEYKLPVFEETKERNTDDIEAIFKDSEVHNVREKEDQPTPMNAFELISLSKGLNLENLFDVDQGFKREIRFTSKCSANEIINKIEEAAKPLGFDVLKKNFKMKLKNVKAGRKGNLNVATEIFQVAPSLHVVKINKAKGDTLEFLKFYNNLSTRLEDVVWKNEDDMDDAK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00461 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 60 72 IPR008271 GO:0004672|GO:0006468
Viun6g00461 366 FunFam Non-specific serine/threonine protein kinase 21 203 - -
Viun6g00461 366 SMART serkin_6 2 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00461 366 SUPERFAMILY Protein kinase-like (PK-like) 10 210 IPR011009 -
Viun6g00461 366 ProSiteProfiles NAF domain profile. 233 257 IPR018451 GO:0007165
Viun6g00461 366 FunFam Non-specific serine/threonine protein kinase 232 357 - -
Viun6g00461 366 CDD CIPK_C 239 353 - -
Viun6g00461 366 Pfam Protein kinase domain 5 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00461 366 Pfam NAF domain 235 294 IPR004041 GO:0007165
Viun6g00461 366 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 342 - -
Viun6g00461 366 Gene3D Transferase(Phosphotransferase) domain 1 21 204 - -
Viun6g00461 366 Gene3D Kinase associated domain 1, KA1 232 357 - -
Viun6g00461 366 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00461 Viun-Chr6 12107784 12115022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00461 7 318 CBL-interacting serine-threonine protein kinases AT2G26980 77.955 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun6g00461 Pkinase 3.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00461 - - qsu:112026068 615.535