Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00457 ATGAATGGGCAGAAAATTAAGCGCAGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGAACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACTGGGGACCCTGTGGCTCTTAAGATTCTTGACAAGGAGAAGGTTCTCAAGTATATGCTGGCTGAGCAGATCCAGCGAGAAATAGCCACAATGAAGTTGATCAAGCATCCAAATGTTGTTCAACTGTATGAGGTCATGGGGAGCAAGACAAAAATATACATTATTTTAGAGTTTGTGACTGGGGGAGAGCTTTTTCATAAAATACTAAACAGTGGACGAATGAGGGAAAAGGAAGCACGCAGATATTTCCAGCAGCTTATAAATGCCGTTGACTATTGCCATAGTAGAGGTGTCTACCACAGAGACCTGAAATTAGAGAACTTACTATTAGATTCTTTCGGGAACCTTAAAATTTCTGATTTTGGATTGAGTGCACTTTCCCAACAAGTCAGGGATGATGGACTGCTTCATACAACATGTGGAACTCCAAATTATGTTGCTCCTGAGGTCCTTAATGATGGAGGCTATGATGGGGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGCTACTTGCCTTTTGATGACACTAATATTCTGAACCTGTATAAAAAACGTATCACTGTATCGGAGATTCTGCGTGATGAATGGTTTAAAAAAGAATACAAACTTCCAGTTTTTGAGGAGACAAAGGAGAGAAACACTGATGACATTGAGGCCATCTTTAAAGACAGTGAAGTACACAATGTAAGAGAGAAGGAAGATCAGCCAACACCTATGAATGCATTTGAATTGATATCCTTGTCCAAAGGGCTGAACCTAGAAAACTTGTTTGACGTAGACCAGGGGTTTAAAAGAGAAATAAGGTTCACATCAAAATGCTCTGCCAATGAGATAATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGTTTTGATGTGCTGAAGAAAAATTTCAAGATGAAGCTTAAAAATGTGAAAGCTGGAAGGAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAGGTGGCACCTTCTCTTCACGTAGTTAAGATTAATAAAGCTAAAGGTGATACATTGGAGTTCCTTAAGTTCTACAACAATCTTTCAACACGCTTGGAGGATGTTGTTTGGAAAAATGAAGATGACATGGACGATGCGAAGTGA 1227 0.4018 MNGQKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGDPVALKILDKEKVLKYMLAEQIQREIATMKLIKHPNVVQLYEVMGSKTKIYIILEFVTGGELFHKILNSGRMREKEARRYFQQLINAVDYCHSRGVYHRDLKLENLLLDSFGNLKISDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDGGYDGAAADLWSCGVILFVLLAGYLPFDDTNILNLYKKRITVSEILRDEWFKKEYKLPVFEETKERNTDDIEAIFKDSEVHNVREKEDQPTPMNAFELISLSKGLNLENLFDVDQGFKREIRFTSKCSANEIINKIEEAAKPLGFDVLKKNFKMKLKNVKAGRKGNLNVATEIFQVAPSLHVVKINKAKGDTLEFLKFYNNLSTRLEDVVWKNEDDMDDAK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00457 408 Pfam Protein kinase domain 13 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00457 408 Gene3D Transferase(Phosphotransferase) domain 1 93 268 - -
Viun6g00457 408 ProSiteProfiles Protein kinase domain profile. 13 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00457 408 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Viun6g00457 408 FunFam Non-specific serine/threonine protein kinase 274 399 - -
Viun6g00457 408 FunFam Non-specific serine/threonine protein kinase 6 225 - -
Viun6g00457 408 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Viun6g00457 408 CDD CIPK_C 281 395 - -
Viun6g00457 408 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 384 - -
Viun6g00457 408 SMART serkin_6 13 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00457 408 SUPERFAMILY Protein kinase-like (PK-like) 9 251 IPR011009 -
Viun6g00457 408 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Viun6g00457 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Viun6g00457 408 Pfam NAF domain 277 336 IPR004041 GO:0007165
Viun6g00457 408 Gene3D Kinase associated domain 1, KA1 274 399 - -
Viun6g00457 408 ProSiteProfiles NAF domain profile. 275 299 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00457 Viun-Chr6 12106374 12115022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00457 4 360 CBL-interacting serine-threonine protein kinases AT2G26980 74.742 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun6g00457 Pkinase 1.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00457 - - cpap:110810700 675.626