Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00406 ATGAGTAGCGTGACTAGTGGGGGTGATGATCGGAAGATATACAGAGGTCGTAAGTCGTCATCATCATTAGATGAAGAAGCTGGAGTTGGAGGTAACATGGGAGGAGAAGTTCCTCTAAAGAAAGGCCCCTGGACTGCAGCAGAGGATGCAATTTTATTAGAATATGTTAATAAGCATGGACAAGGCAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGGTGGGCGAATCACTTGAGACCTGATCTGAAAAAGGGTGCATTTACCCAAGAGGAAGAGAACCGAATCCTTGAGCTCCACGCTAAAATGGGGAACAAATGGGCTCGAATGGCTTCTGAGTTGCCTGGGCGTACGGATAATGAAATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCTGGCTTACCAATCTACCCTCCGGAAATATGTGAGCGGATACTTAATGGAAATCAAGAAAGTAAAAATATTGGTCCCTTGAATATTGAAGCATCCCAGCATGACAATCTCTCACAAACGGACAAATTTGGTATACCAGAAATGGATCTGAAGACTGTCAAATTTCATCATGATCCATCACAGGTACCAGGAATTTTTGATATGCCTGAAAACATGTTTGAGCAAAGTTCGGATTCATCTTATTTGTTCCCAACAATTTATCCTTCAAAACGTCGCCGGGAGTCAGAAATTCTATACAATAGTTTTGGTAGTTGTACAAGTAATGCTCTCCCACTATTTGATCAGTATGGCAATTATACTGGTGACCAAACTAGGTTCTATCCTCCTTTTGATCCTGTTCTTAACACCAGTAATCAGTTTCATGGTGATAACATAAACGGCAGCCATGCCATGTTAAATGGCAATGTCTCTTCTTCCGTGCCCTTATTTGGGGCAAGGAAGTTGGAGCTCCCTTCACTCCAATATACAGAAACTCAACATGGTAGCTGGGTCACACATGGGTCCCCGCTTCCATCACTTGAGTCTGTAGATACCTTGATTCAGTCTCCTCCAGTTGAGTCTATTCCATCAGATCTCATCTCTCCACAAAGCAGTGGTTTGCTGGATGCAATAGTCTACAACTCGAAGAGCGTGAAGAACTCAAATACTGATTTATTTTTCCCAGTGATAACCGGTACATCCAATGAAGCAGCTGGGAGTTCAACCTTGAATCATCCCTATAAGACAGAATGGGATGAGCAAGGGGAATCAAACTCCCCTTTAGGTCAATCGGCTGCTTCAGTTATGACTGACTACACTCCTATAAGTTCAGTAGATGGACCCCAATCAATTGAAACCACTCAAGATCATGATGATAAGGACCAAGCACTCACCTGGTTCCCAAATAGTTCCAGGAAGAAACGAAAACCGGAACAGGTTGATTTTTCACAGCGTCCTGATGCTTTATTTGACTTAGCTTGGTTTGGAAATAATACTGACTATGGATTTAATCAATCTGATCTAAAAGATGCTCTAAATGCACTGCTTGGTGAAGATTACAGTGGTAACTTTGCTGAACATAGCAAGGATAAGCAGTAG 1569 0.4251 MSSVTSGGDDRKIYRGRKSSSSLDEEAGVGGNMGGEVPLKKGPWTAAEDAILLEYVNKHGQGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAFTQEEENRILELHAKMGNKWARMASELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPEICERILNGNQESKNIGPLNIEASQHDNLSQTDKFGIPEMDLKTVKFHHDPSQVPGIFDMPENMFEQSSDSSYLFPTIYPSKRRRESEILYNSFGSCTSNALPLFDQYGNYTGDQTRFYPPFDPVLNTSNQFHGDNINGSHAMLNGNVSSSVPLFGARKLELPSLQYTETQHGSWVTHGSPLPSLESVDTLIQSPPVESIPSDLISPQSSGLLDAIVYNSKSVKNSNTDLFFPVITGTSNEAAGSSTLNHPYKTEWDEQGESNSPLGQSAASVMTDYTPISSVDGPQSIETTQDHDDKDQALTWFPNSSRKKRKPEQVDFSQRPDALFDLAWFGNNTDYGFNQSDLKDALNALLGEDYSGNFAEHSKDKQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00406 522 MobiDBLite consensus disorder prediction 394 441 - -
Viun6g00406 522 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 496 - -
Viun6g00406 522 CDD SANT 43 88 IPR001005 -
Viun6g00406 522 Gene3D - 40 93 - -
Viun6g00406 522 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 88 IPR017930 -
Viun6g00406 522 CDD SANT 96 137 IPR001005 -
Viun6g00406 522 Gene3D - 96 167 - -
Viun6g00406 522 SUPERFAMILY Homeodomain-like 38 135 IPR009057 -
Viun6g00406 522 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Viun6g00406 522 Pfam Myb-like DNA-binding domain 94 137 IPR001005 -
Viun6g00406 522 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Viun6g00406 522 FunFam Transcription factor MYB97 96 170 - -
Viun6g00406 522 MobiDBLite consensus disorder prediction 1 36 - -
Viun6g00406 522 SMART sant 93 141 IPR001005 -
Viun6g00406 522 SMART sant 40 90 IPR001005 -
Viun6g00406 522 FunFam MYB-related transcription factor 40 93 - -
Viun6g00406 522 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Viun6g00406 522 ProSiteProfiles Myb-like domain profile. 36 88 IPR001005 -
Viun6g00406 522 MobiDBLite consensus disorder prediction 394 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00406 Viun-Chr6 11343601 11348631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00406 39 518 MYB Transcription Factor Family AT5G06100 41.153 6.91e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun6g00406 Myb_DNA-bind_6 6.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00406 K09422 - gmx:100800658 734.176