Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00403 ATGGATCTTTCTGGGAAAAGAGTTTCAGTTTCAGGTGAAGGGAGAAGCTGCAACGGTGGTGGTGCTGGTGGCAGCAGCAACCTTCAGCTTGTCCCTTATTCAGAAAGCAAAAAGGTTTGCCCTTTCTGCCAGCGTGAATTCAAGTGCGGAAGATCCTTGGGAGGGCACATCAAAGTGCACAAGAAGAACCGCAGAAGCACCAAATTCACCCACAAGAAGAAGAGCAGCACAAGGAGGTTGAGATCCTCTTCAGCGCTAACAACCCCAACACCCTTGAATGTTGTAAGAGGTGATGAGATGGTAGCACCACTCAGAATTCTTGAAAGCGGTGCAAGGGGTGGTGAAGAAGAAGCACTGAGAATCGATGAAAGCGGTGCAAGGGGTGGCGAAGAAGAAGCACTGAGAATCGATGAAAGCGGTGGAAGTGGGGCTGAGATCCACGACATGTCGAAGTCCTTGGTGGGGTGCGGATGGAAGAGAAAGGGAAGGAGGGGCAGCAACGACGACACGAGCAAGTTGATGAGATGGAATCGTTATCCTTACTCCGATGATGATGAGTACGAGGAATGTGATGTGGAAGATTCGTGTGATGAGGATGACTACGATAACATCAAGTTGAGGAAATGGTTAAGGAGTCGAGGGTACGCAACAGGTGCCCATAAGATCTGTTGGACTAGGAGAATGTTGATGTGCAAAGTGTGCAATCAGTATTTTAGAACTCTGTCTGCAGTGATGAGTCATGTGGATGAGTGTGCCCTAACCAACAGTGATGATCAAGTTGTTGTTGATAACGGTGTCGGAGTTGGCGAAATGCCCGAGGATGCTCCAGTGACAAAAGACAATGGAGTTTCTTCCTCTTCTTCTGTACAACAAAAACAGCATGCATCAACTTCAACTCATGCTGCTGCTCCAACAAAAGATCTTCAATTGGATCTCAATGAAATGCCTCCTCCTGAGGATGATTGA 966 0.4772 MDLSGKRVSVSGEGRSCNGGGAGGSSNLQLVPYSESKKVCPFCQREFKCGRSLGGHIKVHKKNRRSTKFTHKKKSSTRRLRSSSALTTPTPLNVVRGDEMVAPLRILESGARGGEEEALRIDESGARGGEEEALRIDESGGSGAEIHDMSKSLVGCGWKRKGRRGSNDDTSKLMRWNRYPYSDDDEYEECDVEDSCDEDDYDNIKLRKWLRSRGYATGAHKICWTRRMLMCKVCNQYFRTLSAVMSHVDECALTNSDDQVVVDNGVGVGEMPEDAPVTKDNGVSSSSSVQQKQHASTSTHAAAPTKDLQLDLNEMPPPEDD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00403 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Viun6g00403 321 MobiDBLite consensus disorder prediction 112 146 - -
Viun6g00403 321 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Viun6g00403 321 MobiDBLite consensus disorder prediction 61 91 - -
Viun6g00403 321 SUPERFAMILY beta-beta-alpha zinc fingers 39 248 IPR036236 -
Viun6g00403 321 MobiDBLite consensus disorder prediction 61 79 - -
Viun6g00403 321 MobiDBLite consensus disorder prediction 112 144 - -
Viun6g00403 321 MobiDBLite consensus disorder prediction 263 321 - -
Viun6g00403 321 MobiDBLite consensus disorder prediction 1 28 - -
Viun6g00403 321 MobiDBLite consensus disorder prediction 279 304 - -
Viun6g00403 321 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 320 IPR044653 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00403 30 64 C2H2 Transcription Factor Family AT2G42410 42.857 3.73e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun6g00403 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00403 - - var:108345409 395.201