Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00402 ATGGATCGGCGAGATAATGGTAAACAAGCAGTTTCTGATCACGGGTTGTTGGAATCCAGCACGAAAGAGAAGATGAAGAGATCCGTTTTGGGTTCTTACAAAGCTGAAGTTGAATCAATGGCGGATGAAGAAAACCCTTCCCCAAAACTGAGTACGTGTGATATCTGCTTCAAGACTTTTGGGTGCGGCAAGGCGTTAGGTGGACACAGAAGATCCCACTTCATGAAACAGCAGCAACAAAAGAAGGTAAAGACCCGTTTCACTGATAATCACGCATCAAAACCTGGTGGTGATAGTAACATTAGGGTTATCTGTGATTTTGACGATGATGACGGCAAACACATTTGTTGTATTTGCAAGAAGGAATTTCCCACCAAGAATGCTTTGTTTGGGCACATGAGGTCTCATCCTGAGAGACCATGGAGGGGTGTGTCCCCTCCGACTCAAAAGAATTCATCTTCTCCTTCTTCTTCTTACTACCATTCTCCGTCTTCTTCCCTCAATTCTGATTCCATGGAGAAAAACAAGGAGGATCATGATGCTGATGATGGTGGCCACCGTCTGATCTCACCCGATGAACAACATCGCAGAAATGAGATTGATCTTTCACTGTGTACTTCACCCAGCTGGCTTTGTAAAGCTACAAGAGGCAGAAGCTCCACCGGTGCGTATGAGGCTGCAGAAACTCTTTTCTACATGAGTTGTTCCAAGTGCTTTTCCAGTCATGAGCGGAATAGGGTTTTCCCCAAGAACGATGAGGTTCTGCCAAAGACTGCCCCAGCCCTAATCAAGCAGCGCAAAAGGAAGACTTTTGAATCGTCATCGAGTAAGAAAGATAAGGTGAAGAAGATCAAGTTTTTGTTTAAAGGGGAATTGAAGTTGGGAAGCACTTCTAATGGGGCTGGTGAATGTGATGATGGTGAGGGTAAAGAGCTGAACAGGTGCAAGGGTTTATCTGAATCTGGGGTTGAGCATGACCGTGATGAGAAGAACAAAAAGAAGAGTTTTGATGATTTGAATGCTGAATCAGTTATCCCAACTATGCAAGATCATGTTGGTGCTTCTGATGTGAAGAAGATTAACATGGATAAGAAAGGGAAGAACAGTAAGAAATTGGTACTGAATTCAAAGACAAAGGACTCGGAATCTGAGAAAGCGAGTGAAGAGAAAGCAGATTGGTATAAATGTGGTGCATGTGGAAAAAGCTTCAAAACTTTTCAAGGCCTAGGAGGACACAGGTCAGTGCACAAAGAGAAGAACACTGTGAGCATTGATGAGCCAAACCCCTCGGAAGCTGTAGCTGTAGCTGTAGCTGAACAAAACAACTCTAGCAGCTCCAGTAACATGAACAAGATTGAGGAGCCATTATTTAATGAAACAACCTTAGCAGACCAGCAGCCATGTCAATCTTCTGGTGTCAAGAAGCTGAACTTCGATCTGAACGAGTTGCCTTGTGCTATGGATGAGGACTAA 1473 0.4392 MDRRDNGKQAVSDHGLLESSTKEKMKRSVLGSYKAEVESMADEENPSPKLSTCDICFKTFGCGKALGGHRRSHFMKQQQQKKVKTRFTDNHASKPGGDSNIRVICDFDDDDGKHICCICKKEFPTKNALFGHMRSHPERPWRGVSPPTQKNSSSPSSSYYHSPSSSLNSDSMEKNKEDHDADDGGHRLISPDEQHRRNEIDLSLCTSPSWLCKATRGRSSTGAYEAAETLFYMSCSKCFSSHERNRVFPKNDEVLPKTAPALIKQRKRKTFESSSSKKDKVKKIKFLFKGELKLGSTSNGAGECDDGEGKELNRCKGLSESGVEHDRDEKNKKKSFDDLNAESVIPTMQDHVGASDVKKINMDKKGKNSKKLVLNSKTKDSESEKASEEKADWYKCGACGKSFKTFQGLGGHRSVHKEKNTVSIDEPNPSEAVAVAVAEQNNSSSSSNMNKIEEPLFNETTLADQQPCQSSGVKKLNFDLNELPCAMDED 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00402 490 MobiDBLite consensus disorder prediction 171 193 - -
Viun6g00402 490 MobiDBLite consensus disorder prediction 130 193 - -
Viun6g00402 490 MobiDBLite consensus disorder prediction 318 390 - -
Viun6g00402 490 MobiDBLite consensus disorder prediction 356 390 - -
Viun6g00402 490 MobiDBLite consensus disorder prediction 409 429 - -
Viun6g00402 490 SUPERFAMILY beta-beta-alpha zinc fingers 392 420 IPR036236 -
Viun6g00402 490 SUPERFAMILY beta-beta-alpha zinc fingers 50 136 IPR036236 -
Viun6g00402 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 136 IPR013087 -
Viun6g00402 490 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Viun6g00402 490 ProSitePatterns Zinc finger C2H2 type domain signature. 396 416 IPR013087 -
Viun6g00402 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 394 421 IPR013087 -
Viun6g00402 490 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 38 487 IPR044653 GO:0003700
Viun6g00402 490 SMART c2h2final6 114 136 IPR013087 -
Viun6g00402 490 SMART c2h2final6 51 73 IPR013087 -
Viun6g00402 490 SMART c2h2final6 394 416 IPR013087 -
Viun6g00402 490 MobiDBLite consensus disorder prediction 1 26 - -
Viun6g00402 490 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Viun6g00402 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Viun6g00402 490 MobiDBLite consensus disorder prediction 145 170 - -
Viun6g00402 490 Pfam C2H2-type zinc finger 114 138 - -
Viun6g00402 490 Pfam C2H2-type zinc finger 53 73 - -
Viun6g00402 490 Pfam C2H2-type zinc finger 394 418 - -
Viun6g00402 490 MobiDBLite consensus disorder prediction 74 99 - -
Viun6g00402 490 Gene3D Classic Zinc Finger 51 136 - -
Viun6g00402 490 MobiDBLite consensus disorder prediction 318 339 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00402 53 147 C2H2 Transcription Factor Family AT2G26940 38.235 1.08e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun6g00402 zf-C2H2_6 3.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00402 - - var:108344105 456.062