LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g00400	ATGGCCGTTACCTTCTCAAATCTCCACACAGACTCAGGCCTCAAGTCCCTCAACGACTTTCTTTCTGGAAAGACCTACGTTTCTGGGGATCAGTTTACAAAGGACGACATCAAAGTGTACGCTGCCGTTTTGGAGAAGCCGGGCGATGCTTTCCCCAGTGTTGGCAAGTGGTACGAGGTTGTCTCATCTAACCTTGCTGCAAGTTTCCCTGGCAATGCTCAAGGGGTGAGATTCAGTGGCCAAGCTTCTACTCCCGAGGCGGTTCCTGCAAAACCGGAAGCTTCTGCTGCCGAAGATGATGATGACCTTGATCTCTTTGGCGACGAGACCGAGGAAGACAAAAAGGCGGCGGAGGAAAGAGAGGCTGCTAAGAAGTCTGCCAAGAAGAAAGAGAGTGGAAAATCTTCTGTTCTTCTTGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCGGGTCTATTGTGGGGAGCATCGAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACCATTGTTGACGACCTTGTATCTGTGGACTCCCTCATTGAGGAGCAATTGACAGTGGAGCCCATAAACGAGTATGTCCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA	672	0.4851	MAVTFSNLHTDSGLKSLNDFLSGKTYVSGDQFTKDDIKVYAAVLEKPGDAFPSVGKWYEVVSSNLAASFPGNAQGVRFSGQASTPEAVPAKPEASAAEDDDDLDLFGDETEEDKKAAEEREAAKKSAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTVEPINEYVQSCDIVAFNKI	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g00400	223	Pfam	EF-1 guanine nucleotide exchange domain	136	223	IPR014038	GO:0003746\|GO:0006414
	Viun6g00400	223	Gene3D	-	127	223	IPR014717	-
	Viun6g00400	223	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	212	223	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Viun6g00400	223	MobiDBLite	consensus disorder prediction	77	106	-	-
	Viun6g00400	223	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	8	223	-	-
	Viun6g00400	223	FunFam	Elongation factor 1-beta 1 like	128	223	-	-
	Viun6g00400	223	SUPERFAMILY	eEF-1beta-like	131	223	IPR036219	-
	Viun6g00400	223	SUPERFAMILY	GST C-terminal domain-like	10	65	IPR036282	-
	Viun6g00400	223	CDD	EF1B	137	223	IPR014038	GO:0003746\|GO:0006414
	Viun6g00400	223	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	99	107	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Viun6g00400	223	SMART	EF1_GNE_2	134	223	IPR014038	GO:0003746\|GO:0006414
	Viun6g00400	223	Gene3D	-	5	63	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g00400	Viun-Chr6	11158946	11160978	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g00400	1	223	Eukaryotic Initiation Factors Gene Family	AT5G12110	71.930	2.64e-104	299

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g00400	K03232		-	gmx:100306132	338.576