Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00399 ATGTCAAGTGGAGCAACATACTGGTGTTACACATGCAGGCAGCCAATCAGGATTGCTGGGAGGGATGCCATTTGCCCTTACTGCAATGAAGACTTCTTGCAAGAACTTAATGACGTGCAAGGAGTAGTGGAGCAAAGAGGTTCTGAACCAAGAAATGGGTTCAGAGATGCTGTTGATAACTTCATGAGGCAGATAATGGGTGGAAGATACATAAACTTTGGTATTAGGATTGGGAGGTCTGGTTCTACCCAACTTCCTGAACGGACTTGGAGTGTGTTTATATTTCCTAGACAAGAGTCTAGTGCTGATCTGGAAGAATCCTCTTATCAACACGCTACAGATTACCAGTTTGGTGCGTCACAATCTTCAATTAATGCAGTGCCAACTATTAAGATCACGCGTGAACACCTCAACTTTGATTCACTGTGTCCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACATTTATCACTCAGGCTGTATTGTTCCATGGTTAGTTCGCCATAACTCTTGTCCTGTTTGCCGTAGAAAGCTGCCTCCTGAAAGACATTCTAGTTCTCGTGGTACTCAAATTTGGGGAAGAAATAATGCCAATGGTAATAGTGACAATGCTATCTCTAGGGGCTGGGAGAATAGACAACAGAACAATGGATGGAGAAATCTACTATCATTTTTTACTTTTTGTAGCCATTCTGTTCTTCTAATTCAGATACTCAATCGTTTATGCTGA 756 0.422 MSSGATYWCYTCRQPIRIAGRDAICPYCNEDFLQELNDVQGVVEQRGSEPRNGFRDAVDNFMRQIMGGRYINFGIRIGRSGSTQLPERTWSVFIFPRQESSADLEESSYQHATDYQFGASQSSINAVPTIKITREHLNFDSLCPVCIERFEVGSEARKMPCDHIYHSGCIVPWLVRHNSCPVCRRKLPPERHSSSRGTQIWGRNNANGNSDNAISRGWENRQQNNGWRNLLSFFTFCSHSVLLIQILNRLC 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00399 251 FunFam E3 ubiquitin-protein ligase RING1-like 105 190 - -
Viun6g00399 251 Pfam Ring finger domain 143 184 IPR001841 -
Viun6g00399 251 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Viun6g00399 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 190 IPR013083 -
Viun6g00399 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 188 - -
Viun6g00399 251 SUPERFAMILY RING/U-box 123 191 - -
Viun6g00399 251 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Viun6g00399 251 SMART ring_2 143 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00399 Viun-Chr6 11125048 11126292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00399 119 184 C3H Transcription Factor Family AT1G68180 54.545 8.22e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00399 K11982 - gmx:100815972 339.732