Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00395 ATGTCAAGTGGAACAACATACTGGTGTTATACATGCAGGCAGCCAATCTGGCTTGAAAGGAGAGATGCAATTTGCCCTTACTGCGATGGAGGCTTTGTGCAAGAACTTTACGAGCTGCTGCGAGCAGTTTCAAGCCAACAAGGCTTTTCATCACAAAGGGAAGATTTTCAACACGTCCCTGACATTATGGATGCTGTGAGAGCTGTTATGGAGCAAAGAGGTTCTGAGCCAAGAGTTGGAGACAATTTCATGAGGCAGAGAATGGCTGGAAGCTATACAAATTTTGATGTAAGAAGGAGGTTTGGTTCCACCCCAGTTCCTGATCAGACTTGGGGGGTCTATACCTCTGGTCCTTATCTCATATTTCATGGTCAACCTCCAGGGTTTACTGTCTCTAACACTGCCTCAAGAAGTGGTTCCGGGCATGTTGATTTTGGTCACTACTTTCTTGGTCCTAGACTTGAAGGACTCATTGAGCAGCACATAACCAATGACCGGCTTGGTCCACCTCCTGCATCACGCTCTTCTATTGATGCAATGCCAACCATTAAGATCACAAATGAACACCTACAATCTGATTCACACTGTGCAGTTTGTAAGGAAAGGTTTGAACTGAGTTCTGAGGCCAGGAAAATGCCATGTAGCCACATTTACCACTCAGACTGCATTGTTCCATGGTTGGTTCAGCACAATTCATGTCCACTTTGCCGTGTTGAGTTGCCACCACAAGGACACTCCAGTTCTCGAAGTAGTCGAATTAGGGGAGGAAGGAATGGTAATGGCAGTGGCAGTGACAGTATCTCAAGGAGAAGTGGGAATAGAGAGATGAACAGTGGAAGGAGGAATCTGCTATCATATTTGTGGCCATTTCGAACTTCTTCCAGTTCAAATACTTGA 897 0.4548 MSSGTTYWCYTCRQPIWLERRDAICPYCDGGFVQELYELLRAVSSQQGFSSQREDFQHVPDIMDAVRAVMEQRGSEPRVGDNFMRQRMAGSYTNFDVRRRFGSTPVPDQTWGVYTSGPYLIFHGQPPGFTVSNTASRSGSGHVDFGHYFLGPRLEGLIEQHITNDRLGPPPASRSSIDAMPTIKITNEHLQSDSHCAVCKERFELSSEARKMPCSHIYHSDCIVPWLVQHNSCPLCRVELPPQGHSSSRSSRIRGGRNGNGSGSDSISRRSGNREMNSGRRNLLSYLWPFRTSSSSNT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00395 298 MobiDBLite consensus disorder prediction 243 277 - -
Viun6g00395 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 243 IPR013083 -
Viun6g00395 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 241 - -
Viun6g00395 298 MobiDBLite consensus disorder prediction 242 277 - -
Viun6g00395 298 SUPERFAMILY RING/U-box 176 243 - -
Viun6g00395 298 FunFam E3 ubiquitin-protein ligase RING1-like 159 243 - -
Viun6g00395 298 Pfam Ring finger domain 195 237 IPR001841 -
Viun6g00395 298 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Viun6g00395 298 CDD RING-H2_RNF126-like 196 237 - -
Viun6g00395 298 SMART ring_2 196 236 IPR001841 -
Viun6g00395 298 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00395 Viun-Chr6 11084562 11087142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00395 166 291 C3H Transcription Factor Family AT1G68180 42.063 4.69e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00395 K11982 - var:108344709 538.11