Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00375 ATGGAACTAGAACGCTACGAAGTTGAAATGGAACCAGAATGCCGTGGGTGGAGGAGAAGTGAGCGCAGAGAAGAGTCGAGAAGAAGAGACGCAATCGCAGAGTGTGTGAGGTGTCTCGGCGCAGAGTCGGGCCGGCCCGTCGGACCCGGTCCATTTTGCCATCCCTACTTTCCGGCCTTGATGATATTGAGTGATGATCGTCAATCTTTTGTCATAGAGTTCCTGTTGGAATTCGGCATTGATGCAGCAGCGGAAGCAGCGCCGATTCAGTATTTGGGGATGATTCCGGCATCTGATGAAGCCGTTCAGACGTCGTTGCAGAAATGTAGAGTTGTGACAGAGAATGAGTGTTGCTCAATCTGCTTGGAAGAGATGAATGTGAATGATGAGTGTCACAAAATGCCATGCAATCATGCGTTCCATCACACTTGTATTCTCACTGGGCTGCGAACTAGTCATGTTTGTCCCTTGTGCCGTTTCCCTTTGCAAACCGGTCAGGAGTAG 504 0.5 MELERYEVEMEPECRGWRRSERREESRRRDAIAECVRCLGAESGRPVGPGPFCHPYFPALMILSDDRQSFVIEFLLEFGIDAAAEAAPIQYLGMIPASDEAVQTSLQKCRVVTENECCSICLEEMNVNDECHKMPCNHAFHHTCILTGLRTSHVCPLCRFPLQTGQE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00375 167 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Viun6g00375 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 164 IPR013083 -
Viun6g00375 167 SUPERFAMILY RING/U-box 109 163 - -
Viun6g00375 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 29 162 - -
Viun6g00375 167 Pfam Ring finger domain 118 159 IPR001841 -
Viun6g00375 167 SMART ring_2 118 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00375 Viun-Chr6 10455427 10456117 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00375 92 162 C3H Transcription Factor Family AT1G18760 38.356 1.88e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00375 - - vun:114188394 333.569