Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00373 ATGCAGTCACAGTCACGACGTACCCACTATGCTTTGACGAGGCTGAATAATCAACACACCACAGTTGCTCCTGGTGATACTTTCATCCTACACATCCAGGTTTTATATTTTCCAATCCGACCAGGATGCTTAGAGCATCATTTTTCACCAAGACCAATATCCTCTCTGGATTTCTTCCAACATGGTCAAAACCTCTTATGCTCAACCTTGTCACATTCACGCTTTGTCATTGATTCTCTTGAAGATGTATGTGAAAGGATTGTTTATAGTGTTAGAGAAATGTTTCAAGTTGGTAGCATTTCTGATTTTCTTTCTTTGGAATTTCAAAACCGTGTCATCCCTTTATCGCTGTCAGTGTTAATATTGGATGATGGAGTGCATGCAGCTACTGAAGAGTCCAGGCAGAGTTTCCAGAGTTCTAGAAGAAATCATTGGCAGCCTTCTAGAAGGAATCAGAGACAACCTTCTAGAGGGAATCATATGTCCAAGGAAGCTATAATAAGTACCTTCCTGAAGAAATGTACTGTTATGGTAGGAAGTGAAGATTGTTGTATCTGTTTAGAAGAGTTGAATATCAATGCTGAGTGCTACACCATGCCATGTCAACATGTCTTTCACCTACCATGTATTCTCACATGGCTCAAAACCAGTAATGTCTGTCCCTTGTGTCGCTACTCTTTACCATCAAGCGGAAACTAG 699 0.4063 MQSQSRRTHYALTRLNNQHTTVAPGDTFILHIQVLYFPIRPGCLEHHFSPRPISSLDFFQHGQNLLCSTLSHSRFVIDSLEDVCERIVYSVREMFQVGSISDFLSLEFQNRVIPLSLSVLILDDGVHAATEESRQSFQSSRRNHWQPSRRNQRQPSRGNHMSKEAIISTFLKKCTVMVGSEDCCICLEELNINAECYTMPCQHVFHLPCILTWLKTSNVCPLCRYSLPSSGN 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00373 232 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 122 225 IPR044675 -
Viun6g00373 232 MobiDBLite consensus disorder prediction 133 160 - -
Viun6g00373 232 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Viun6g00373 232 Pfam Ring finger domain 182 224 IPR001841 -
Viun6g00373 232 SUPERFAMILY RING/U-box 177 228 - -
Viun6g00373 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 230 IPR013083 -
Viun6g00373 232 SMART ring_2 183 223 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00373 Viun-Chr6 10362978 10363935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00373 147 230 C3H Transcription Factor Family AT5G20910 35.955 3.04e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00373 - - pvu:PHAVU_006G017700g 375.555