Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00372 ATGTCGACAGTGCATCATTACTACAGTGTGATGAGGGTGAATGATGAACACACCACGGTTCTGCCTGGTGATTATTTCAACTTTGATGTCAAAGTTAGATTCCACTCAGCCAATACATTCCCAGCAGGGTTACAGCATCATCTTTCTCCGGCGGCAATACCCGCTCAAGATTTCTTCCAACAGGGTCCAACCTTCTTACACACCATGTTCTCACTTTCACCTTTCTCCCTTTTTGGATGTACGGAGCAAATAATAGAAGGGGTTCTTTCCGATGTTCAAGGCTTGTTTCGAGTTGAAAACCTTTCTTCTTTTATTTCTCTGGAACCTCAGGAATCTCAAAACCGAATCATCCCTTTAACTATCACGGTTATAATATTGAAATTTGAAGATCGTGCAATTATTGAAGAGGGCAGACAGAGGTATATAAGGAGCCAGAGGGTGAGTTCAAGAAGGAGTGAAAGGCTCGCTACAAGAAGGAGCGAGAGGCTGAGAGCGAGTCAGAGGCAAAGTTCTAGGCAGAATCAGAGGCAGAGTTCTGAAGTGGAATATGATTCCGATGATGAAGTCATGATAAATTCATTTTTGAAGAAGTGTACTGTCATCAGAGGACGTGAAGATTGCTGTATCTGCTTGGAAGAGTTGAGTGTCAATCCTGAGTGCTACACGTTGCCATGCCAACATGCCTTTCATCTTCCATGTATCCTCACATGGCTCAAAAACAGTCAAGCGTGTCCCTTGTGTCGCCACTCTTTGCGGACAGCTGAGACAGCTGAGAACTAG 780 0.4423 MSTVHHYYSVMRVNDEHTTVLPGDYFNFDVKVRFHSANTFPAGLQHHLSPAAIPAQDFFQQGPTFLHTMFSLSPFSLFGCTEQIIEGVLSDVQGLFRVENLSSFISLEPQESQNRIIPLTITVIILKFEDRAIIEEGRQRYIRSQRVSSRRSERLATRRSERLRASQRQSSRQNQRQSSEVEYDSDDEVMINSFLKKCTVIRGREDCCICLEELSVNPECYTLPCQHAFHLPCILTWLKNSQACPLCRHSLRTAETAEN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00372 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 254 IPR013083 -
Viun6g00372 259 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Viun6g00372 259 Pfam Ring finger domain 206 248 IPR001841 -
Viun6g00372 259 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 141 251 IPR044675 -
Viun6g00372 259 MobiDBLite consensus disorder prediction 153 183 - -
Viun6g00372 259 SUPERFAMILY RING/U-box 206 253 - -
Viun6g00372 259 SMART ring_2 207 247 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00372 Viun-Chr6 10360703 10361482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00372 184 251 C3H Transcription Factor Family AT3G30460 39.706 5.65e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00372 - K22378 var:108320046 375.17