LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g00359	ATGGCCCACAGGCGTTGCCTCTTGATAAGAGGGAACCTCATGAATCGAAAGTGCTACCCGTCTTTCGGTTATGTTCTCCATAGTGATGAAGGGGAACGTGAATGCACTAGTGAAAAGTCGTCTTCAGCGGGGATTAGTAATTCTATCCAAAAAAGGATGTTTGGGAACTCAGTTGATGGACCAGTGAGGTGTTTTGCCTACACTGAACATAGAATGTATTCAAACAGATTCCTTTTTCCGAGCTCTGGATATAATTTATGTCGACATATGTCAACAGCTAATCCGGGTTCCGATAATATTGAAATAGTGACTGACATAGCAGATGTTCTCAAAGACAAAGCAATCGATGCTGTGAATTCTCAGGCTCCTATTCTTAAAGAAGTTGCAATTGCCTCTGCTGATTCTGTTTTACCTGTGAAGGCCTTGCAGTACATTATAGATGCCATGCATTCCTGCACTGGATTGAACTGGTGGGCAGCCATAGTTCTAACAACTCTCTTGATTCGAAGCGCAACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAGCTTACACTGATGAGGCCTCACATGGAAAAAATAAAGGAAGAGATGGAAGATAAGGCTATGGATCCCATTGCTGTTGCTGAAGGTCAGAAAAAAATGAAGATGCTATTTAAGGAATATGGTGCAAGTCCATTTACTCCATTGAAGGGGCTCTTTATTCAAGGTCCTGTCTTTATTAGTTTTTTCCTTGCGATAAGAAACATGGCTGAAAAGATGCCATCATTCAAGCATGGGGGAGCCTACTGGTTTGTTGATCTTACTACTCCAGATGCCTTGTACATTTTGCCAGTTCTGACTGCATTGACATTCTTAATAACAGTAGAGTGCAATATGCAAGAAGGCTTGGAAGGAAATCCAGCTGCTGCCACCATGAAAAAATTCTCGAGGGTTATTGCAATCCTTACAGTTCCTTTCACAATGGGATTTCCGAAGGCTATATTTTGTTACTGGATTACATCAAATTTGTTTTCACTTGGATATGGACTCGTTCTTAAAGCTCCTGGTGTAAAGAAAGCTTTGGGTATCCCCATAATACAGGAAGCAGCAGCCACCAGTGGTGCACAATCTCCCTCTTCTATATTTCCAGCACTGAAACAAGCTACAGCAGCAAGAATTGCACCAAAGTCATTGCCTGTTGAACCATCAAAACATCAACAGAGAAAGACATCTTCTGATGTCAATCAAAGACTAAAACGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAAAACAAGAACTGA	1290	0.4101	MAHRRCLLIRGNLMNRKCYPSFGYVLHSDEGERECTSEKSSSAGISNSIQKRMFGNSVDGPVRCFAYTEHRMYSNRFLFPSSGYNLCRHMSTANPGSDNIEIVTDIADVLKDKAIDAVNSQAPILKEVAIASADSVLPVKALQYIIDAMHSCTGLNWWAAIVLTTLLIRSATVPLLINQLKATSKLTLMRPHMEKIKEEMEDKAMDPIAVAEGQKKMKMLFKEYGASPFTPLKGLFIQGPVFISFFLAIRNMAEKMPSFKHGGAYWFVDLTTPDALYILPVLTALTFLITVECNMQEGLEGNPAAATMKKFSRVIAILTVPFTMGFPKAIFCYWITSNLFSLGYGLVLKAPGVKKALGIPIIQEAAATSGAQSPSSIFPALKQATAARIAPKSLPVEPSKHQQRKTSSDVNQRLKRLEKQVKGRKKNKN	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g00359	429	Pfam	60Kd inner membrane protein	157	347	IPR028055	-
	Viun6g00359	429	NCBIfam	membrane protein insertase YidC	156	345	IPR028055	-
	Viun6g00359	429	CDD	5TM_Oxa1-like	154	351	-	-
	Viun6g00359	429	MobiDBLite	consensus disorder prediction	392	429	-	-
	Viun6g00359	429	MobiDBLite	consensus disorder prediction	398	417	-	-
	Viun6g00359	429	Coils	Coil	400	420	-	-
	Viun6g00359	429	PANTHER	OXA1	111	400	IPR001708	GO:0016020\|GO:0032977

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g00359	Viun-Chr6	9864295	9872849	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g00359	160	428	Chloroplast and Mitochondria Gene Families	AT2G28800	23.322	6.64e-08	52.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g00359	K03217		-	gmx:100787806	727.628