Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00352 ATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTGGTTCTATTCAACAAGATGAGAAGTTGTTGATCTATGAATTCACGCCCAACAGAAATACATTGCAAGGCAAATCCCTAGATTGGACTAAATGGTTGAAAATTATCGACGGAATTGCTCGGGGTCTTATGTATCTTCATCGAGATTCTAGACTAAGAATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGACAATATGATTCCAAAGATATCAGATTTTGGATTAGCAAGAATATTTGGAGTAGATCAAGCCGAAGGAAACACAAACAGAGTGATGGGAACACATGGCTATATGCCTCCAGAATATGCAGTGCATGGTTGTTTCTCAACCAAATCTCATGTTTTCAGTTTTGGAGTAATTGTTATTGAGATAATTAGTGGAAGGAAGAATCGTGGATTTCGTGACCCTCACCATCATCTTCTCAACCTTCTTGGCCATGCGTGGAGATTATGGAATGAAGAAAGGCCATTGGAATTAATGGATGAGATATTAGATGATGGTGCAGACTTATCTTTAGAAATATTACGGTGTATTCATGTGGGTCTACTGTGTGTACAACAGAATCCAGAAAATAGGCCTAATATGTCATCTGTTGTTATTTTTCATTGCAAAACTTATTACTCTGTCATCAACAAGTCTGGTTACAATGTCCACAAGTTTCTGTGGTAA 720 0.3708 MATLQHRNLVKLLGGSIQQDEKLLIYEFTPNRNTLQGKSLDWTKWLKIIDGIARGLMYLHRDSRLRIIHRDIKTSNILLDDNMIPKISDFGLARIFGVDQAEGNTNRVMGTHGYMPPEYAVHGCFSTKSHVFSFGVIVIEIISGRKNRGFRDPHHHLLNLLGHAWRLWNEERPLELMDEILDDGADLSLEILRCIHVGLLCVQQNPENRPNMSSVVIFHCKTYYSVINKSGYNVHKFLW 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00352 239 ProSiteProfiles Protein kinase domain profile. 1 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00352 239 Gene3D Phosphorylase Kinase; domain 1 1 28 - -
Viun6g00352 239 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 225 - -
Viun6g00352 239 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 218 - -
Viun6g00352 239 SMART serkin_6 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00352 239 Gene3D Transferase(Phosphotransferase) domain 1 29 229 - -
Viun6g00352 239 Pfam Protein tyrosine and serine/threonine kinase 1 215 IPR001245 GO:0004672|GO:0006468
Viun6g00352 239 SUPERFAMILY Protein kinase-like (PK-like) 1 217 IPR011009 -
Viun6g00352 239 ProSitePatterns Serine/Threonine protein kinases active-site signature. 67 79 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00352 Viun-Chr6 9678213 9686422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00352 1 226 Receptor kinase-like Gene Family AT4G23320 54.506 2.17e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g00352 PK_Tyr_Ser-Thr 2.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00352 - - gmx:100819820 348.591