Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00350 ATGGTTGAACCTGCCATTGTGATTCCATCATCCTCTTCTCATTCTTCTTTTGACCACTCCACTGATTCTGATAGTGTTGCTGGTTCACCCTCTTTCCAGAAACCATCTTCTTCAACAACTCGTCACCACCATTTATCAAGAAAGAGAAAACTTGGTAGACCCGTAGGTTCTAAGAACAAGCCAAAACCACTGCTTTTGATTGACAGAGCCAATAAGAATGTGGTAAAACCCGTTTTCATTGAAGTTCCTGATACCTATGATGTGATTAGGACAATTGTTGAATTCGCTCGTCACCACCATGTTAGCATCGTTGTGCTGAACGCATCAGGAACTGTTTCCAATGTCACTATTCGTAACACTCATTATCATGCTTCTCCTTTCACTCTTTATGGACCTTTCAAGTTAATTTCCCTCACTGGTACCTACCTACATAATGCTGCTTTCCATGGCTCTTCGTCTTTATCATCAATCCTTAACAACGACCCTCGTTGTTCTTTTGGGGTTTCTGTTTCTGGAATCAAAGAACAATGCTTCATCGGAGGAGTTGGAGGAAAAGTTGTTGCAGAGAATGGAGTTATGGTGGCTGCTGTTATAGTGAACAAATTTTAA 609 0.4105 MVEPAIVIPSSSSHSSFDHSTDSDSVAGSPSFQKPSSSTTRHHHLSRKRKLGRPVGSKNKPKPLLLIDRANKNVVKPVFIEVPDTYDVIRTIVEFARHHHVSIVVLNASGTVSNVTIRNTHYHASPFTLYGPFKLISLTGTYLHNAAFHGSSSLSSILNNDPRCSFGVSVSGIKEQCFIGGVGGKVVAENGVMVAAVIVNKF 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00350 202 Gene3D - 75 202 - -
Viun6g00350 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 198 IPR014476 GO:0003680
Viun6g00350 202 MobiDBLite consensus disorder prediction 1 63 - -
Viun6g00350 202 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 197 IPR005175 -
Viun6g00350 202 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 196 - -
Viun6g00350 202 CDD DUF296 87 198 IPR005175 -
Viun6g00350 202 MobiDBLite consensus disorder prediction 40 56 - -
Viun6g00350 202 ProSiteProfiles PPC domain profile profile. 72 202 IPR005175 -
Viun6g00350 202 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00350 Viun-Chr6 9528480 9529088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00350 38 200 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.637 1.06e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00350 - - vun:114188375 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00350 6 9528480 9529088 Viun6g00350 6 9528480 9529088 ECH