Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00334 ATGGGCAACTGTTGCTCGGGCAACGCTGCCGATGGCCCGGCCGACAGCGACGCCGCTGATGACAAGGGAGAAACCAACCATCAAAATAGCATGCGTTCAGACAGCAACAACAAAAATAATGGCGAGGATAACGCTGGCGCCACCGCTACCACCCCACCGGCATCGGCGCCGCCACCTACGGTCACGTCACCTCCTTCGAAATCCTCAAAACCGGGCGCCATGGGCCCTGTCCTGGAGCGGCCGATGGAGGACGTGAGAGCAACGTACACCATTGGGAAGGAGCTAGGGAGAGGGCAGTTTGGTGTGACGCATTTGTGCACGGACAAAGTAACTGGTGAACAATTTGCATGCAAAACCATTGCCAAGAGGAAGCTTGTGAGCAAGGAGGACATAGAGGACGTGAGAAGAGAGGTGCAAATCTTGCACCACCTCTCGGGCCAACCCAACATTGTGGAACTTAAAGGTGCCTATGAGGATAAACAATCGGTGCATTTGGTCATGGAGCTTTGTGCTGGTGGTGAACTTTTCGATCGTATCATTGCCAAGGGCCATTACACTGAACGTGCTGCAGCTTCTTTGCTCAGAACCATTGTCCAGATTGTTCACACCTTCCATTCCATGGGTGTCATTCACAGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAGCAAGGATGAAAATGCACCCCTCAAGGCCACGGATTTTGGTCTATCCGTTTTCTTCAAAGAAGGAGAAATGTTCAAAGACATTGTCGGAAGTGCATATTACATTGCTCCTGAGGTTTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATGTGGTGTTCCTCCATTTTGGGCAGAATCGGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCAGCAAAGGATCTTGTAAGCAACATGTTGAATTCAGATCCCAAAGAAAGATTTACAGCAGCACAAGTTCTAGATCATCCATGGATCAAGGAGGATGGAGAAGCACCTGATAAACCACTTGACAATGCTGTACTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGGTGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAAGGGCATGGACACCGACAATAGTGGAACCATCACAATTGAAGAGCTCAAACAAGGGCTTGCAAAGCAAGGAACAAAGCTTTCAGAACAAGAAGTTAAGCAGTTGATGGAAGCTGCTGATGCTGATGGCAATGGAACCATAGATTACGACGAGTTCATCACGGCAACGATGCAGATGAACAGAATGAACAGAGAAGAACATCTTTACACAGCTTTCCAATACTTCGATAAAGATAATAGCGGGTTCATTACCACAGAAGAACTAGAACAAGCTCTCCGTGAGTTTAACATGCATGATGGAAGGGACATCAAGGAAATCCTTGTAGAAGTTGATGGAGATAATGATGGGCTAATTAACTATGATGAGTTCGTGGCAATGATGAGAAAAGGAAATACAGATGCTGCAACAAGGAAGAGGCGTGATTCAAATTATACATAG 1635 0.4624 MGNCCSGNAADGPADSDAADDKGETNHQNSMRSDSNNKNNGEDNAGATATTPPASAPPPTVTSPPSKSSKPGAMGPVLERPMEDVRATYTIGKELGRGQFGVTHLCTDKVTGEQFACKTIAKRKLVSKEDIEDVRREVQILHHLSGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFFKEGEMFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFTSDPWPSISPSAKDLVSNMLNSDPKERFTAAQVLDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREFNMHDGRDIKEILVEVDGDNDGLINYDEFVAMMRKGNTDAATRKRRDSNYT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00334 544 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Viun6g00334 544 ProSiteProfiles Protein kinase domain profile. 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00334 544 FunFam Calcium-dependent protein kinase 1 91 174 - -
Viun6g00334 544 MobiDBLite consensus disorder prediction 1 81 - -
Viun6g00334 544 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Viun6g00334 544 Gene3D - 355 533 - -
Viun6g00334 544 Pfam Protein kinase domain 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00334 544 Pfam EF-hand domain pair 464 527 IPR002048 GO:0005509
Viun6g00334 544 Pfam EF-hand domain pair 395 455 IPR002048 GO:0005509
Viun6g00334 544 CDD STKc_CAMK 89 346 - -
Viun6g00334 544 FunFam calcium-dependent protein kinase 1 175 354 - -
Viun6g00334 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 84 522 - -
Viun6g00334 544 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Viun6g00334 544 FunFam Calcium-dependent protein kinase 1 355 530 - -
Viun6g00334 544 ProSitePatterns EF-hand calcium-binding domain. 510 522 IPR018247 -
Viun6g00334 544 Gene3D Transferase(Phosphotransferase) domain 1 175 354 - -
Viun6g00334 544 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Viun6g00334 544 SUPERFAMILY Protein kinase-like (PK-like) 75 375 IPR011009 -
Viun6g00334 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Viun6g00334 544 ProSitePatterns Protein kinases ATP-binding region signature. 95 122 IPR017441 GO:0005524
Viun6g00334 544 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Viun6g00334 544 ProSiteProfiles EF-hand calcium-binding domain profile. 501 532 IPR002048 GO:0005509
Viun6g00334 544 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Viun6g00334 544 SUPERFAMILY EF-hand 387 528 IPR011992 -
Viun6g00334 544 MobiDBLite consensus disorder prediction 29 51 - -
Viun6g00334 544 Gene3D Phosphorylase Kinase; domain 1 90 174 - -
Viun6g00334 544 SMART serkin_6 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00334 544 SMART efh_1 394 422 IPR002048 GO:0005509
Viun6g00334 544 SMART efh_1 466 494 IPR002048 GO:0005509
Viun6g00334 544 SMART efh_1 430 458 IPR002048 GO:0005509
Viun6g00334 544 SMART efh_1 501 529 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00334 Viun-Chr6 8722434 8725911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00334 1 543 EF-hand Containing Proteins AT5G12180 78.821 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun6g00334 Pkinase 2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00334 K13412 - gmx:100781355 923.694