Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00312 ATGACAAACAACTCCATGCCAATCTCCCTCTCCCAAATCTCAGTCTCCGGAGACTCAGATTCTGAATCCTCTTGGGACCACCACACCAGCTCCTCCCACTGTCCTCTTCCATCGCTGCCACCACCCATCATAAACCAACAATGGCAGAATCTCCCTATTGCCACTCCACCCTCCAAGAAGCCACGTGGCAGACCTCCAGGCTCCAAGAACAAGCCCAAATACATTCTCCCACAACCCAACATCAAGATTCTCATCGTCAATGTCGCTCCAGGACATGACATCATTGAAACCATTATTAACATCGCTCGGCGCACCCATGTCAGCCTCACCATCCTCAGTGCCTCCGGTGTCATCACCACCGTCACCCTCCGCCATGTCCCCAGTGGCTCCTCCGCCGTCATGCTCCATGGACCCTTCAACTTACTTTCCCTCACTGGCTCCTACTTACACAACAACCAATACACCCTTCTCCCCGGCGCCACCCCTCCTCGTTCCTTATCCTTTGGGATACACCTCTCCACCTCTCACGGTCGAGTCTTCGGTGGCCTCGTCGGCGGTAGAGTCGTCGCCGGTGACGATGTCAACTTGACCATTTCTACCTTCGAGAACCCTGAAATTTATAGATACGGTTCTGAAGAACAAGAAAGGGATGATCATGACAATAACATCAACAACAATAATAGTTGTAACCATAACCCTAGTAATTTCAACAAGGGTGGCGACTTGTCAATGTTGAACTCTGCTAATGTCGGAATCGGTGGCTGGTGA 768 0.513 MTNNSMPISLSQISVSGDSDSESSWDHHTSSSHCPLPSLPPPIINQQWQNLPIATPPSKKPRGRPPGSKNKPKYILPQPNIKILIVNVAPGHDIIETIINIARRTHVSLTILSASGVITTVTLRHVPSGSSAVMLHGPFNLLSLTGSYLHNNQYTLLPGATPPRSLSFGIHLSTSHGRVFGGLVGGRVVAGDDVNLTISTFENPEIYRYGSEEQERDDHDNNINNNNSCNHNPSNFNKGGDLSMLNSANVGIGGW 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00312 255 FunFam AT-hook motif nuclear-localized protein 17 80 217 - -
Viun6g00312 255 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g00312 255 MobiDBLite consensus disorder prediction 52 74 - -
Viun6g00312 255 MobiDBLite consensus disorder prediction 223 240 - -
Viun6g00312 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 203 IPR005175 -
Viun6g00312 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 213 - -
Viun6g00312 255 CDD DUF296 82 191 IPR005175 -
Viun6g00312 255 ProSiteProfiles PPC domain profile profile. 77 222 IPR005175 -
Viun6g00312 255 MobiDBLite consensus disorder prediction 1 39 - -
Viun6g00312 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 234 IPR014476 GO:0003680
Viun6g00312 255 Gene3D - 80 226 - -
Viun6g00312 255 MobiDBLite consensus disorder prediction 212 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00312 Viun-Chr6 8090043 8090810 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00312 59 216 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.542 4.63e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00312 - - pvu:PHAVU_006G013800g 316.235