Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00297 ATGGATGTTCAAGTGATAAATGCGGAAGGAAGTGGTCATCAGACAAAGGCAGATAATGGGGATGCAGAACCAAGTGACAGTGAAGTTAATAATACTGAAAAGTATGGAACTCATGCGGAGGATGGGATTTCTGAGCCATATGTGGGTATGGAATTTGACACTGTAGATGTTGCTAAGGCATTTTATATTGAGTATGCTAGACACATGGGCTTTAGCTCTAAAGTTGGCCCATATGGTCACTCTAAAATTGATGGGGAAAATTATAGGGAGTTTGTATGTGGTAGGGAAGGTTTAAGAAAAGGACTAAATGAAAGTTGCAATGCAATGATTAGGATCGAGCTAAAGGGTCAAAATAAATGGGTGGTAACAAAATTAGTGAAGGAGCATACTCATTCCCTGTTCAGTTCCAGTAAGGCATACAATAATCATCCAAGTAAGCATTTTTCTAGTGTTGGAAGGACAATGCCTGAAACTTATCAAGGAGTGGGTCTTGTTCCTAGTGGTGTTATGTATGTATCTATGGATGGGAATCGTGTTTCGAATCAGAATACTCGTGGGATGAAGAATATTCATACCACTCCTGCTGAACGAAGTCACCCGGTTAAAAATTCCTCATTGGTGAATTATACTGTTAGGCCTTCTTTGCCAAACCGGACATTGGGGAGGGATGCTCATAATCTGCTGGAGTACTTTAAAAAGATGCAGGCTGAGAATCCTGGTTTCTTCTATGCTATACAACTTGATGAAGACAATCGAATGTCTAATGTCTTCTGGGCAGATGCAAGATCAAGGACAGCATACAGTTATTACGGTGACACAGTTCATCTTGACACAACTTACAAAGTAAATCAATATAGAGTGCCATTTGCTCCTTTTACTGGGGTAAATCATCATGGTCAAATGGTTTTGTTTGGTTGTGCACTGCTTTTGGATGATTCTGAGGCATCTTATTTATGGCTGTTGAAGACATTTCTGACGGCAATGAATGATTGTCAGCCTGTCTCTATAACTACTGATCAAGATAGAGCCTTGCAGACAGCAGTTTCTCAAGTTCTCCCACAAACCCGCCACTGTATTAGCAAGTGGCATATCTTGAGAGAAGGTCAAGAAAAGTTGGCCCATGTATGTCTTGCACATCCAAATTTTCAGGTTGAACTTTATAATTGTATTAACTTGACAGAAACCATTGATGAGTTTGAGTCATTTTGGAATTGCATCATTGATAAATATGAACTCAGAAGAAATGATTGGCTTCAGTCATTATATAATGCTCGTGCTCATTGGGTTCCAGCATTCTTCCGCAGTTCGTTTTTTGCAGCACTCTCTCCTACTCAAGGTTTTGATGGTTCTTTTTTTGATGGTTATGTCAACCAACAGACGACATTGCCATTGTTCTTCAGGCAGTACGAAAGAGCTTTAGAGAGCTGGATTGAAAAGGAAATAGAAGCAGATTTTGAGACAGTTTGCACTACCCCAGTTTTGAAGACACCTTCACCAATGGAGAAACAGGTTGCTAATCTTTATACGAGAAAAATATTTTCCAAGTTTCAAGATGAGCTTGTTGAAACTTTTGTTTATACTGCAAATAGAATTGAAGGAGATGGACCAAATAGCATATTTAGAGTTGCAAAATTTGAGGATGATCAGAAGGCATACACGGTCTCATTAAACCATTCTGAGTTGAAAGCTAATTGTAGTTGCCAAATGTTTGAATATTCAGGCATCCTTTGCAGACATATTTTAACAGTTTTCACTGTGACAAATGTACTTACATTACCACCCCATTACATCTTGAAACGTTGGACAAGAAATGCAAAAAGCAGTGCCGGATTGGATGAACATACCGGTGAATCACATGCGCAGGAGTCTTTGACAGCAAGATATAGCAATCTATGTAAGGAAGCCATCAGATACGCTGAGGAAGGGGCAGTAACTGTGGAAACATATAATGCTGCAATAAGTGGTATTAGAGAAGGTGGAAAGAAGGTTGCTAATGTGAAAAGAAGTGTTGCCAAAGTCTCTCCTCCTAACAATGTGGCCAGTGGGACTGCATATGATGACAGGAAAACTACCACTCCAACTTCAGATACAACTCCTCTTTTATGGCCACGGCAAGATGAGATAACGAGGAGGTTTAATCTTAATGATGCTGGTGGTCCTGTTCAATCAGTTGCTGATCTAAACTTGCCACGGATGGCCCCAGTCTCTCTTCATCGTGATGATGGTCCATCTGAAAACATGGTAGTTCTTCCATGCCTAAAATCAATGACATGGGTAATGGAGAACAAGAACTCAACTCCAGGGAATAAAGTAGCTGTTATCAATCTTAAGTTGCAAGATTATAGCAGGGTTCCATCCACAGAATCTGAGGTTAAGTTTCATCTTTCTAGAGTTACTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGTGAACAGCTCTCAACACCAGCTAATAAGGTTGCAGTAATAAATCTCAAGCTTCAAGATACTGAGACAACCTCTGGTGAGTCAGAAGTGAAGTTTCAGGTGTCCCGGGATACATTGGGTGCTATGCTACGATCAATGGCCTATATCCGTGAGCAGCTTTCTCATGCTGACGATGCACATTTAGAACCTGTATCCAAGAAGCATAAGAAGTAA 2643 0.4018 MDVQVINAEGSGHQTKADNGDAEPSDSEVNNTEKYGTHAEDGISEPYVGMEFDTVDVAKAFYIEYARHMGFSSKVGPYGHSKIDGENYREFVCGREGLRKGLNESCNAMIRIELKGQNKWVVTKLVKEHTHSLFSSSKAYNNHPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNTRGMKNIHTTPAERSHPVKNSSLVNYTVRPSLPNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSYYGDTVHLDTTYKVNQYRVPFAPFTGVNHHGQMVLFGCALLLDDSEASYLWLLKTFLTAMNDCQPVSITTDQDRALQTAVSQVLPQTRHCISKWHILREGQEKLAHVCLAHPNFQVELYNCINLTETIDEFESFWNCIIDKYELRRNDWLQSLYNARAHWVPAFFRSSFFAALSPTQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETVCTTPVLKTPSPMEKQVANLYTRKIFSKFQDELVETFVYTANRIEGDGPNSIFRVAKFEDDQKAYTVSLNHSELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPPHYILKRWTRNAKSSAGLDEHTGESHAQESLTARYSNLCKEAIRYAEEGAVTVETYNAAISGIREGGKKVANVKRSVAKVSPPNNVASGTAYDDRKTTTPTSDTTPLLWPRQDEITRRFNLNDAGGPVQSVADLNLPRMAPVSLHRDDGPSENMVVLPCLKSMTWVMENKNSTPGNKVAVINLKLQDYSRVPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHADDAHLEPVSKKHKK 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00297 880 Pfam FAR1 DNA-binding domain 61 134 IPR004330 -
Viun6g00297 880 Pfam SWIM zinc finger 552 586 IPR007527 GO:0008270
Viun6g00297 880 ProSiteProfiles Zinc finger SWIM-type profile. 552 588 IPR007527 GO:0008270
Viun6g00297 880 Pfam MULE transposase domain 274 366 IPR018289 -
Viun6g00297 880 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 665 IPR031052 GO:0006355
Viun6g00297 880 MobiDBLite consensus disorder prediction 674 700 - -
Viun6g00297 880 SMART 26again6 563 590 IPR006564 GO:0008270
Viun6g00297 880 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00297 Viun-Chr6 7755682 7766723 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun6g00297 MULE 7.6e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00297 - - gmx:100786516 1591.63