Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00288 ATGGAAGATAACAACAGCCAGGCTTCATCTCCTGCTTCAACAACCGAAGGAAAACCAATACGATGCAAAGCCGCGGTTTCTAGAAAAGCCGGTGAGCCATTGGTGATCGAAGAGATAACCGTGGCGCCACCAATGCCCGGTGAGGTGCGAATTCGTGTTATTTGTTCCTCTCTCTGCCACAGTGACGTCACTTTTCGGGAACTCCAGGTTCCTCCTGCCATTTTTCCAAGGATTCTGGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTAGGGAAGGATGTAAGTGAACTTAAAAAAGGTGATGTGGTTATTCCAGTTATCCTACCAGAATGTGGGGAGTGCATAGATTGCAAATCAAGCAAGAGCAACCGTTGTACTAATTTCCCTTTCAAGGTGTCTCCCTGGATGCCTCGACATGGTAGCTCTAGGTTCACCGACAAGAATGGAGAGATCATATACCATTTTTTGTTTATTTCAAGCTTCAGTGAGTACACTGTGGTGGACATTGCCAATATTATCAAGATTGATCCACACATTCCCCCTGACAGGGCATGCCTTCTTGGATGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACTGCTGGTGTGGAACCAGGGTCTACAGTAGCCATTTTTGGGCTGGGATCTATTGGATTAGCAGTTGCAGAGGGAGCAAGACTTTGTGGAGCAACTAGGATTATAGGTGTTGATGTCTATCCAGAAAAATTTGAAATTGGAAAAAAATTTGGTGTCACAGACTTTGTCCATGCAAGAGAATGTGAGGACAAACCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTCGAATGTGTTGGCATGGCATCAGTGGTGCATGAAGCGTATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAACCAGGAGCCAGGATAAATATCAGTTCCCATGAGGTCCTTCATGACGGCAAGTGCCTCATGGGATCCTTGTTTGGAGGTCTCAAACCCAAGTCTCATGTCCCTATTCTCCTTAAACGTTACGTGGACAAGGAATTGCAGTTGGATGAATTTGTCACTCATGAGGTGGAGTTTAAGGACATCAACAAGGCTTTTGATTTATTGAGTACAGGAAAGTGTCTTCGATGTGTGATTTGGATGGATAAGTGA 1182 0.4543 MEDNNSQASSPASTTEGKPIRCKAAVSRKAGEPLVIEEITVAPPMPGEVRIRVICSSLCHSDVTFRELQVPPAIFPRILGHEATGVVESVGKDVSELKKGDVVIPVILPECGECIDCKSSKSNRCTNFPFKVSPWMPRHGSSRFTDKNGEIIYHFLFISSFSEYTVVDIANIIKIDPHIPPDRACLLGCGVSTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDVYPEKFEIGKKFGVTDFVHARECEDKPVSQVIIEMTGGGADYCFECVGMASVVHEAYASCRKGWGKTIVLGVDKPGARINISSHEVLHDGKCLMGSLFGGLKPKSHVPILLKRYVDKELQLDEFVTHEVEFKDINKAFDLLSTGKCLRCVIWMDK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00288 393 SUPERFAMILY GroES-like 342 390 IPR011032 -
Viun6g00288 393 Gene3D - 194 334 - -
Viun6g00288 393 Pfam Zinc-binding dehydrogenase 218 338 IPR013149 -
Viun6g00288 393 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 80 94 IPR002328 GO:0008270|GO:0016491
Viun6g00288 393 Gene3D - 25 386 - -
Viun6g00288 393 PANTHER ALCOHOL DEHYDROGENASE 17 389 - -
Viun6g00288 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 179 354 IPR036291 -
Viun6g00288 393 FunFam Alcohol dehydrogenase 6 25 205 - -
Viun6g00288 393 FunFam S-(hydroxymethyl)glutathione dehydrogenase 194 334 - -
Viun6g00288 393 Pfam Alcohol dehydrogenase GroES-like domain 46 175 IPR013154 -
Viun6g00288 393 SUPERFAMILY GroES-like 15 200 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00288 Viun-Chr6 7242774 7247035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00288 48 368 Monolignol Biosynthesis Gene Families AT4G37990 22.699 9.25e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00288 K00121 - gmx:100817521 714.916