Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00266 ATGTCAAAAAAGTTGGATCGTGGAGGAGGAAGGGACCGGTTTAGGAGGGATTACCCTTCAAGGTATGAAGATAACAAGGGGAATGGGGTTAGTGGACGTGACAACCGCAGCAACAACCCTCCTTCCAGGCATCTCTGGGTTGGGAATCTATCCCACAGTATTGTAGAGGAAGAACTTGCTCACCCTTTCTTGCGATTTGGACCACTGGAGAATGTTGCATTCCAGTCTGGCCGCAGCTATGCTTTTGTTAATTTTAGAAGGGATGAAGATGCTATTGATGCCATGAGGGCACTGCAAGGTTTTACTCTTGCTGGCAACCCACTTAGAATCGAGTTTGCAAAGGCGGATAAGCCATCAGCAGTACCACGCGATGAAGATTACTCTTGGGATGAACGGAACTCAACATTAAGGGGTTCTCCTTTCTCACAAAGAGAGTTTAGGGGATACCGTGGTAGTCCTGAGCTGCAGTATTCTGACAAATCTAAGCTGAGTGACAAAAATCCAGAACCCAGTGAGGTCCTGTGGATTGGGTTCCCGGCTCAGTTGAAGGTGGACGAATCAATTTTAAGAAAGGCATTTTCCCCCTTTGGTGAAATAATGAAGATTACAACGTTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTAGGAGCCTTACAGCTGCATGCAGAGCAAAAGACAATCTGAAAGGGAAGTTATTTGGAAATCCCCGTGTTCATATTTGTTTTGCCAAAAGTGAAACAGGTTCATCAAACAGTGAGAGGAGATCACTTAATGGCCCTCGCTCTCCAATTTACAAGTCAAGTGGTCGTGATGGATCTTCTGACAACCTCAGACAGGATCGAAGCTTCAACGGTGATCGCAGCATTGGTTCCCCAAATCAGTTCCGGAATTGGGATTCTGATCCTTACGATCACAAAAGGGGTTCTTCATGGATGGGTGGAACTAACACATATGAACAAAGAAAAGTTGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATGTATGAACTTATGAATAGTCCATCAAGAGAAAGAGATGATCGATTTCCTCAAAAAGGTGCATTCTACGAAGATCTGCGGGCCTTTACAGATGTTCCCTATCTACGTGAGGCTAAAAGGCCGAAGACTGGTTCTCCTCCTCTTGAAAGAGAGCTTCCAGAGTATCCCTTCTCTGAATTAGAAAAACAGAAACACGTTCTCCCAAGACTTTTATCTGATTTACCACCACGTGAGCATTTTGATAAAGGATTTGATGCTGCAAATTTTACTTACGGCCAGACTCTTGAACGCCCCCCAAATTCACCTCTGCCTCGTTTAGATAGACAAGAAGGCTGGAAATCTTATGATAATTTCCAAATGGGTTCCAGTGCTCAGCAGTTAGGTTATGTTGAAAAGAAAAGATTCACGCCTGAACCCGATAGTTCATCTTTAGCGGAGTGGAAATGGGAAGGAACTATTGCTAAAGGTGGAACCCCTGTCTGTCGAGCACGCTGCTTTCCGGTGGGGAAAGTCCTAGATATGATGTTACCCGAATTCTTGGATTGCACAGCAAGAACTGGTCTAGATATGCTTTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGCTGACATGGAATTCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGCGCTGCTGTTGCCAAACTGGATGACAAGACCACCTTATTTCTAGTTCCACCATCCGAGTTCTCAGAGAAAGTACTGAAGGTACCTGGTAAATTGAGCATATCTGGTGTTATTCTGAGGTTGGAGAATCCTGTTATAAATCATGGCCCAGGACACATGCAACGAGAAATGACAAACGAAAACCTGTTGTCCTATAATGAGAATATACTGCATCCGAAGTCATCATTTCCTTTGGAACGCCTACCTACATCACCATCTATTTCAGAATTGGGTAATTCTGGAATCAGCAATCTTTCATTTCTGGGAAATAAATTTGCAGCAGCTCCATCAGTTTCTGATTCAGTTCATGCCATGGCTACCATGTCTGAGTCTCATGACGAAAGAAATCGCAACTACACTGTCCAGCAGCGGACTTCTGGACCAAACTGGTCTTCTCAAAATCTGCAGAACTTCTCCGGTAGAACTCTATCATTGCAACCATCAGGTGGTACTGTAGAACCTGTTGCCGATGAACGCCAACTCACCATTCCAAGGGCAGTGACAGATGCAAACTCAATTCAACATCCCAATGGACCTTCTGTTATTCCATTTTATGGTGATAACAAGTTGTCTTACCCAGACATAAGACATTTAGATCCTTTATCAGTGCCTGTGGGAGCACTTCCACCAGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAGCAGCAGAGGCAGTCAGGAAGCTCTTCAAGTACATCTGCATTGGGAGATCGTGATCCGCGCCAGATTAACAGATTTAACACGTCTGACATCTCATCCAGATTTAGCACGTCCGACACCTCATCCCGACCATCCCAAAAATATGCTACAGAAAACAATCTGGTGAGTTCTGATCTCTCGACATCTCAACTGGGTCAAATTTTACAGATGCAGAAACAGCAACCCCAGGTGTCACAGATTGTTCAAAGGGATCCACAAAGAGAGGGTAATGGAAATCAGCTGGTGACTGATGGCACCTTGCAGGAAGATTCTGATTCAGATCCTCAGAAACGTCTACAAGCAACACTTCAGCTAGCTGCTGTTCTTCTTCAGCAAATCCAGCAAGGAAAAGGAAGTTGA 2790 0.4444 MSKKLDRGGGRDRFRRDYPSRYEDNKGNGVSGRDNRSNNPPSRHLWVGNLSHSIVEEELAHPFLRFGPLENVAFQSGRSYAFVNFRRDEDAIDAMRALQGFTLAGNPLRIEFAKADKPSAVPRDEDYSWDERNSTLRGSPFSQREFRGYRGSPELQYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILRKAFSPFGEIMKITTFPGRSYAFVRFRSLTAACRAKDNLKGKLFGNPRVHICFAKSETGSSNSERRSLNGPRSPIYKSSGRDGSSDNLRQDRSFNGDRSIGSPNQFRNWDSDPYDHKRGSSWMGGTNTYEQRKVGEKGRTLGVSQEMYELMNSPSRERDDRFPQKGAFYEDLRAFTDVPYLREAKRPKTGSPPLERELPEYPFSELEKQKHVLPRLLSDLPPREHFDKGFDAANFTYGQTLERPPNSPLPRLDRQEGWKSYDNFQMGSSAQQLGYVEKKRFTPEPDSSSLAEWKWEGTIAKGGTPVCRARCFPVGKVLDMMLPEFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADMEFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSEFSEKVLKVPGKLSISGVILRLENPVINHGPGHMQREMTNENLLSYNENILHPKSSFPLERLPTSPSISELGNSGISNLSFLGNKFAAAPSVSDSVHAMATMSESHDERNRNYTVQQRTSGPNWSSQNLQNFSGRTLSLQPSGGTVEPVADERQLTIPRAVTDANSIQHPNGPSVIPFYGDNKLSYPDIRHLDPLSVPVGALPPEQLAQLAASLLEQQRQSGSSSSTSALGDRDPRQINRFNTSDISSRFSTSDTSSRPSQKYATENNLVSSDLSTSQLGQILQMQKQQPQVSQIVQRDPQREGNGNQLVTDGTLQEDSDSDPQKRLQATLQLAAVLLQQIQQGKGS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00266 929 MobiDBLite consensus disorder prediction 796 851 - -
Viun6g00266 929 SMART rrm1_1 44 111 IPR000504 GO:0003723
Viun6g00266 929 SMART rrm1_1 173 241 IPR000504 GO:0003723
Viun6g00266 929 CDD SPOC_FPA-like 483 602 - -
Viun6g00266 929 Gene3D - 158 256 IPR012677 -
Viun6g00266 929 MobiDBLite consensus disorder prediction 283 298 - -
Viun6g00266 929 PANTHER RNA RECOGNITION MOTIF-CONTAINING 31 923 - -
Viun6g00266 929 Gene3D - 24 120 IPR012677 -
Viun6g00266 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 115 IPR000504 GO:0003723
Viun6g00266 929 MobiDBLite consensus disorder prediction 865 899 - -
Viun6g00266 929 MobiDBLite consensus disorder prediction 685 712 - -
Viun6g00266 929 MobiDBLite consensus disorder prediction 248 272 - -
Viun6g00266 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 237 IPR000504 GO:0003723
Viun6g00266 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 109 IPR000504 GO:0003723
Viun6g00266 929 MobiDBLite consensus disorder prediction 796 815 - -
Viun6g00266 929 MobiDBLite consensus disorder prediction 696 712 - -
Viun6g00266 929 CDD RRM_SF 183 240 - -
Viun6g00266 929 MobiDBLite consensus disorder prediction 865 908 - -
Viun6g00266 929 MobiDBLite consensus disorder prediction 822 851 - -
Viun6g00266 929 CDD RRM_SF 45 111 - -
Viun6g00266 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 245 IPR000504 GO:0003723
Viun6g00266 929 MobiDBLite consensus disorder prediction 248 330 - -
Viun6g00266 929 Pfam SPOC domain 478 592 IPR012921 -
Viun6g00266 929 MobiDBLite consensus disorder prediction 1 41 - -
Viun6g00266 929 FunFam RNA recognition motif (RRM)-containing protein 158 251 - -
Viun6g00266 929 SUPERFAMILY RNA-binding domain, RBD 20 119 IPR035979 GO:0003676
Viun6g00266 929 SUPERFAMILY RNA-binding domain, RBD 183 274 IPR035979 GO:0003676
Viun6g00266 929 MobiDBLite consensus disorder prediction 120 147 - -
Viun6g00266 929 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00266 Viun-Chr6 6853073 6869450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00266 32 244 Eukaryotic Initiation Factors Gene Family AT1G22760 27.354 6.16e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00266 - - vra:106775670 1667.51