Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00257 ATGACGAGGAAGAAGGTGGATCTAACATATATAAAGAATGATTCAAAGAGAAAGACAACATTAAGCAAAAGGAAAAATGGTTTAGTGAAAAAGATTAATGAAATCAACATTCTTTGTGGGATTGAAGCATGTGCTATAATTTATACTCCAGATAATCCTCAGGCAGAGGTTTGGCCATCTGATAGGGCAGTCCAAAGTGTGCTTTCTAGGTTTAGGACAGTGTCTGAACTTGAGAAAGGCAAGAAAAAGTTGTGTCAGGAGAGCTTTTTGAGGCAGAGGATCATCAAAGCACAAACACAATTGAGGAAACTAAGGAATGAAATAAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAATACCTCAATGCTAAGAACAACTTTGAAAATTCAAGAATGATTGATCTCAATGATATCTCAAACTTGATTGATCAAAACTTGGAGAAAATAGAAAACAACATCAGCATAAGTCAATCCCAAAAGGTGAAAACTATTGCTGAAAATGGAGGAGAAACCATGAGTTCCCTTGTGAACCATGTTATAGGGTTAGAGACCCATGTAGAGGCAATGCAACATCATAACTTGTCTATGGACCTCAACAATGGCTATGGTAAAACCATTGGGTGA 624 0.3718 MTRKKVDLTYIKNDSKRKTTLSKRKNGLVKKINEINILCGIEACAIIYTPDNPQAEVWPSDRAVQSVLSRFRTVSELEKGKKKLCQESFLRQRIIKAQTQLRKLRNEIRKKEVTLLMFQYLNAKNNFENSRMIDLNDISNLIDQNLEKIENNISISQSQKVKTIAENGGETMSSLVNHVIGLETHVEAMQHHNLSMDLNNGYGKTIG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00257 207 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Viun6g00257 207 PANTHER MADS BOX PROTEIN 3 153 - -
Viun6g00257 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Viun6g00257 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun6g00257 207 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Viun6g00257 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun6g00257 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun6g00257 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun6g00257 207 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Viun6g00257 207 Coils Coil 87 114 - -
Viun6g00257 207 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Viun6g00257 207 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00257 Viun-Chr6 6666452 6667242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00257 1 176 Type I MADS-box Gene Family AT5G48670 45.652 2.69e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun6g00257 SRF-TF 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00257 - - var:108319985 362.073