Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00216 ATGAAGAAGCTTTCTCTTTATACTTGTTTACTGAGTTTGAGTCTCTTGGCTCTTCTTCCCTGCAGCAAAGCCAGTCAGGCCGAGAAACTTCTTGAGTTGATCCTGTCTAGGACCTCACAGAAACCTCCTGTTACCCTTTCTGAGGCTGAGGAAGATGCATTGGAAACACATTCTTCTGCTTATGTTGCACCCCAAGAGGGTCTCAGCCAAGCTGACAAGATTCTACAATTGCCTGGCCAACCCTATGGGGTCAATTTTGATCAATATTCAGGCTATGTTACTGTTGATCCAGTAGCTGGAAGAGCACTTTTCTATTATTTTGTTGAGTCTCCTTATAACCCTTCAACTAAACCTTTAGTATTGTGGCTCAATGGAGGACCTGGTTGTTCCTCATTGGGGTATGGAGCATTTGAGGAATTGGGACCTTTCAGAATAAACTCTGATGGAAAAACACTCTATCGTAACAAATATGCTTGGAATGAAGTGGCAAATGTGTTGTTCTTGGAATCCCCAGCTGGAGTGGGGTTTTCCTACTCAAACACCACTTCAGACTATGATGATGCAGGAGATAAATCTACTGCTAAAGATGCCTATGTTTTCCTCATCAATTGGCTAGAAAGGTTTCCACAGTACAAAACTCATGATTTGTACATAACTGGGGAGAGCTATGCTGGCCATTATGTGCCTCAGCTTGCATACACTATTTTGCTCAACAATAAATACGCTCCCCAAACTATTAACCTCAAAGCCATTGCTATAGGGAATGCTTGGATTGATGATGTTACAAGTCTGAAGGGGATATTTGATTACTTATGGGCTCATGCTTTGAGCTCAGATCAAACACATGAGTTAATTGAGAAGTACTGTGATTTCAGTGAAAAAGTTTCAAGAATATGTGCCAATGCATCAAGAACGGCCTTTTTTGATGAGAGAGGAAAGATAGATTTTTCTAACATTTATGCTCCACGGTGTCACGATTCTTCTCTCAAAAATGCATCAACTGGTTTTGTAACTGATTTTGACCCATGTTCTGATAACTACGGCGAGGCCTATCTAAATAGGCCAGAAGTCCAACTAGCTCTTCATGCAAAACCCACAAACTGGACCCATTGCAGTGAAGTATTAAACTACAAGGACAGGTCTACTACCATCTTACCGGTCATCAGGTATCTCATCGACAGTGACATTGGATTGTGGGTATACAGTGGTGATATTGATTCAGTGGTGCCAGTCACATCTTCCAGATATTCAATCAACACCCTCAAGCTACCTATCCAAGTTCCTTGGTATCCATGGTATTCTGGAAATGAGGTTGGAGGGTATGTGGTGCAATACAAAGGAGCGACATTTGTTACAGTAAGAGGAGCAGGACATTTGGTCCCAAGTTGGCAGCCAGCAAGGGCTCTAACCTTAATCTCCTCATTCCTCTCTGGAATCCTTCCTCCTACTTCACCATGGCAGCCTTTCTAA 1470 0.4238 MKKLSLYTCLLSLSLLALLPCSKASQAEKLLELILSRTSQKPPVTLSEAEEDALETHSSAYVAPQEGLSQADKILQLPGQPYGVNFDQYSGYVTVDPVAGRALFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNKYAWNEVANVLFLESPAGVGFSYSNTTSDYDDAGDKSTAKDAYVFLINWLERFPQYKTHDLYITGESYAGHYVPQLAYTILLNNKYAPQTINLKAIAIGNAWIDDVTSLKGIFDYLWAHALSSDQTHELIEKYCDFSEKVSRICANASRTAFFDERGKIDFSNIYAPRCHDSSLKNASTGFVTDFDPCSDNYGEAYLNRPEVQLALHAKPTNWTHCSEVLNYKDRSTTILPVIRYLIDSDIGLWVYSGDIDSVVPVTSSRYSINTLKLPIQVPWYPWYSGNEVGGYVVQYKGATFVTVRGAGHLVPSWQPARALTLISSFLSGILPPTSPWQPF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00216 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 74 465 IPR001563 GO:0004185|GO:0006508
Viun6g00216 489 SUPERFAMILY alpha/beta-Hydrolases 75 479 IPR029058 -
Viun6g00216 489 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Viun6g00216 489 FunFam Carboxypeptidase 340 479 - -
Viun6g00216 489 FunFam Carboxypeptidase 68 326 - -
Viun6g00216 489 Gene3D - 384 478 - -
Viun6g00216 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Viun6g00216 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Viun6g00216 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 448 461 IPR001563 GO:0004185|GO:0006508
Viun6g00216 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Viun6g00216 489 Pfam Serine carboxypeptidase 78 478 IPR001563 GO:0004185|GO:0006508
Viun6g00216 489 Gene3D alpha/beta hydrolase 69 326 IPR029058 -
Viun6g00216 489 Gene3D - 343 376 - -
Viun6g00216 489 FunFam Carboxypeptidase 384 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00216 Viun-Chr6 5207548 5213929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00216 351 478 Calmodulin-binding Proteins AT2G22960 28.889 7.27e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00216 K16297 - gmx:100790394 828.55