Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun6g00210 | ATGGGGCGCAAAGAGAAGCCAAAATCGAAGGCAATGGAGGAGCGCGGCGATGACCATTTTACCGGCGCTTCGCCGTCACTTGTCTTCAGCAGCGACGACGACGAAGCCAACCAAGATCTCAGCCTCAAGATTGTCGAAAAAGCCATGCGAATGCGTGCAGCCAAGCACGCCGCCCCAAGCGACGACGTTTTGTCTTCGCAGACACTCGAGCTCGCTGTGGTCCGGAACGTCAGCGTTTCTGATGTGCCCAGTGCAATCGCTGATTCTGAAGTGAAGGAGAAGAAGAAAATAACTAAGTTGAAGATTGAGATTGGGGATGAAAGTGTTGTTATAGCCAATGAACAAGAGATGGAGCAGACCATCAAAGATAATGAGAATCATGAGTCTGTGGAAGGAGGTGCAGTTCAGACAGGCGACAATATGGTTCTGCGAAAGCTGCTTCGGGGCCCGAGGTATTTTGATCCACCAAACAATAGTTGGGGAGCGTGTTTCAACTGTGGCGAGGAAGGTCATGCTGCTGTGAACTGTTCAGTGGCAAAGCGGAAGAAGCCATGCTATGTTTGTGGTGTTTTGGGACACAATGCAAAACAATGTACTAAAACAAAAGATTGCTTTATCTGTAAGAAAGGTGGTCACCGTGCTAGAGACTGCCCGGAGAAGCATGCAAGTACTCCCGGAACCATTGCAATTTGCTTAAAGTGTGGAAATTCTGGGCATGATATGTTTGGATGCAAGAATGATTATTCATTGGATGATCTTCAGGAAATTCAATGTTATGTCTGCAAGAAACTTGGCCACTTGTGCTGTGTCAATTCTGATGATGCAACACCAGGAGAAATTTCTTGTTACAAATGTGGTCGGTTGGGTCATACTGGTTTGGCATGTTCAAGGTTGCAGGATGAGATTGCAAGTGGAGCGACACCTAGTTCATGCTTCAAATGTGGTGAAGAAGGGCATTTTGCCCGGGAGTGCACAAGTGCTGTAAAGACAGTAAAGAGGAGTCGTGACTCATCACGCACAAAAGATAAAAGATCCCATAAAGAAAATGATTACATAGGAAATAGATCAGCACCTAATGATATGGATGTAGCTCGCAGAAAGAAACGATCTCCTACGGAAGAGAGAGGAGGCTTTTCTCTTCCCAAGAAATCAAAGAGTAGAGGTGGCTGGATGCAGGAGCATCCTGACGAAGAAAGAGGCTTTACAACTCCAAAGAAATCCAAGAGTAGAGGTGGGTGGACAACGGAGCATCCGGCGGAACATAAAGGCTATACAACTCCTAAGAAATCCAGGAGTAGAGGTGACTGGAGCACCGAGCATCCTGAAGAATTCTTTCCTCCCATGGCAATGAGGAACAGCTATAGGTTTTCAGGGTCACCATATTCCAGAAGCACTACAATTCATTCCTTCGGTAGTGGAAGTCATACTCCAGGTTATAAATCTTCCAAGGTGTGGACTGGTCATGATGGAACCCCTATGTCCCAAGGTTCAGCTTGGTCAAATCATCATAGGTTTTCAGCGTCTAGGTTTGGAAATTCTAGTAGTGGTGGGTATGGTAGGAATTACAGCCGGTGGTAG | 1578 | 0.4651 | MGRKEKPKSKAMEERGDDHFTGASPSLVFSSDDDEANQDLSLKIVEKAMRMRAAKHAAPSDDVLSSQTLELAVVRNVSVSDVPSAIADSEVKEKKKITKLKIEIGDESVVIANEQEMEQTIKDNENHESVEGGAVQTGDNMVLRKLLRGPRYFDPPNNSWGACFNCGEEGHAAVNCSVAKRKKPCYVCGVLGHNAKQCTKTKDCFICKKGGHRARDCPEKHASTPGTIAICLKCGNSGHDMFGCKNDYSLDDLQEIQCYVCKKLGHLCCVNSDDATPGEISCYKCGRLGHTGLACSRLQDEIASGATPSSCFKCGEEGHFARECTSAVKTVKRSRDSSRTKDKRSHKENDYIGNRSAPNDMDVARRKKRSPTEERGGFSLPKKSKSRGGWMQEHPDEERGFTTPKKSKSRGGWTTEHPAEHKGYTTPKKSRSRGDWSTEHPEEFFPPMAMRNSYRFSGSPYSRSTTIHSFGSGSHTPGYKSSKVWTGHDGTPMSQGSAWSNHHRFSASRFGNSSSGGYGRNYSRW | 525 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun6g00210 | 525 | SUPERFAMILY | Retrovirus zinc finger-like domains | 157 | 201 | IPR036875 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | SMART | c2hcfinal6 | 203 | 219 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | SMART | c2hcfinal6 | 281 | 297 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | SMART | c2hcfinal6 | 162 | 178 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | SMART | c2hcfinal6 | 230 | 246 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | SMART | c2hcfinal6 | 184 | 200 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | SMART | c2hcfinal6 | 310 | 326 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Viun6g00210 | 525 | PANTHER | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN | 1 | 409 | - | - | |
| Viun6g00210 | 525 | Gene3D | - | 202 | 251 | - | - | |
| Viun6g00210 | 525 | Gene3D | - | 306 | 348 | - | - | |
| Viun6g00210 | 525 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Viun6g00210 | 525 | ProSiteProfiles | Zinc finger CCHC-type profile. | 163 | 176 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | ProSiteProfiles | Zinc finger CCHC-type profile. | 185 | 200 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | MobiDBLite | consensus disorder prediction | 360 | 440 | - | - | |
| Viun6g00210 | 525 | ProSiteProfiles | Zinc finger CCHC-type profile. | 282 | 295 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | Gene3D | - | 155 | 201 | - | - | |
| Viun6g00210 | 525 | Gene3D | - | 252 | 301 | - | - | |
| Viun6g00210 | 525 | ProSiteProfiles | Zinc finger CCHC-type profile. | 204 | 219 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | Pfam | Zinc knuckle | 204 | 219 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | Pfam | Zinc knuckle | 310 | 326 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | Pfam | Zinc knuckle | 162 | 177 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | Pfam | Zinc knuckle | 184 | 200 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | MobiDBLite | consensus disorder prediction | 331 | 353 | - | - | |
| Viun6g00210 | 525 | MobiDBLite | consensus disorder prediction | 331 | 444 | - | - | |
| Viun6g00210 | 525 | ProSiteProfiles | Zinc finger CCHC-type profile. | 311 | 326 | IPR001878 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | SUPERFAMILY | Retrovirus zinc finger-like domains | 201 | 247 | IPR036875 | GO:0003676|GO:0008270 | |
| Viun6g00210 | 525 | SUPERFAMILY | Retrovirus zinc finger-like domains | 275 | 326 | IPR036875 | GO:0003676|GO:0008270 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun6g00210 | 10 | 266 | C2H2 Transcription Factor Family | AT5G20220 | 24.088 | 2.98e-06 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun6g00210 | - | - | gmx:100794448 | 777.319 |