Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00207 ATGGCTTCTTTGATGCGTCAGAAATTGTTCTCAATTCTTATGTTTTACTTACTTGGCACCCTTAACATTTTACCAACTGAAACAGCCTCAACTTTCAGGCACTACAATTGCACACAGAAGCCAAAGTTTAGTCCCAAAAGTAGTTACCAATTCAACCTGAATAAACTCTTATCTAAACTTGAATCCAAAGTTAACAGCACCAACTATTACTACACCACAGTAAGTGGAAGAAACAAACAAGACACTGTCTATGGCCTCTTCATGTGCAATGGATACATGGAGAAATGTGGAGAATGTGTGAATACTTCAATCCAGACACTTAAATCAAAGTGTATCTTCAACAAAGAGGCTATAATTTGGACTCATGAATGCTTGGTTCGCTACACAAACATGTTTTTCTTCAACACTACTAAGAAATCGCCATCATGGTGTGTTAAGAACAGTGAGGATTATGAGGGGGAATTGGATATTTTCAACAGAATGCTGAGTTCCTTGATGAAGGATCTTCTGACTGAAGCCATTGAAGCTCCAATGGGTTCTGTTAAGTTTGCTGTGAAGAAAAAAAGTATCTCTCAGGAGAAGCACTTTTTTGGCTTTGCTCAGTGCGTGCCATACCTCTCCAAGGAAAATTGCAGGAAGTGCCTTAGGGATGCCATGGATTTTCTTCAAACATGTGCAAGAGGCAAGATAGGAGGAAGAGTTATATATCCAAGCTGTATTGTTAGATATGATCATTATCTGTTTTTCCCACTTCCTAGAGGAAAAAGAAAGAATCTGGGAGTAATTGCATCAATCATATTTTTTCATGGCCTTGTTCCAGTCATTGTTTTGTTTTTTGTTTGCTATTTGTTGCACAGGGAGTTAAGGAAGGATCTCAAGCACCGAAAAGGAAATTCTAACATTACTTTTGGTTTAGGTGGGGAAGAGATTTCAACAGAATTGAACTCTCTGCAATTTGAATTGAGTACTATTCAAGAAGCAACAAACAAGTTTTCTGATGATAACAAGATAGGGGAAGGTGGTTTTGGAGCAGTGTACAAGGGTGTGTTTTCAAATGGACTTGAAATAGCAGTAAAGAGGCTAAAGAAAAATTCCAGTCAAGGAGCTACAGAATTCAAGAAAGAGGTGTTGCTAATTTCCAAACTTCAACACAGAAATCTTGTTAGACTGTTAGGATTTTGCGTTCAAAGGAATGAGAAGATACTCATTTATGAGTTTGTGCACAACGAAAGCCTTGATTACTATCTGTTCAGCCCTCAAAATCATAGGAAATTAAGTTGGTCCGAACGTTACGAGATTATAAGAGGAATTGCACGAGGAATTCTCTATCTTCACGAGGATTCTCATCTTAACATTATACACTGTGATCTTAAACCTAGTAACATTTTGTTAGACAACAAAATGAACGCAAAGATATCAGATTTTGGATTAGCAAGGATTATTTCCATCGATCAAATGCAAGGGAATACAAGTATAATTTCTGGAACATATGGCTACATGTCTCCTGAATATGCAATGCTTGGTCAATTTTCTATGAAATCTGATGTTTTTAGTTTTGGAGTTATAATTCTTGAAATCATCAGTGGAAAGAGAAACGTTGATGGGAACGGAAAAGATTTGGATGATCTCTTGAGCCATGCTTGGAAGAAGTGGAAGAAAAACAGAGTACTTGAATTGTTGGATCCCTCATTACAACACTCCTTTTCTGAAACAGAAATCAATAAGTGTGTACAAATTGGTTTATTATGTGTGCAAGGAAACCCAGATCAGAGGCCTATCATGGCAAAAATTGCTTTCTATTTTAGCTGTGATCAACTTGGGAAACTGCCTTTACCACAAGAACCAGCATTTTTCATGCGTGGAAAAACAGAAACCAAGGTTATTTCAAGAAAAACCCTTTCTTTGGTATAG 1911 0.3715 MASLMRQKLFSILMFYLLGTLNILPTETASTFRHYNCTQKPKFSPKSSYQFNLNKLLSKLESKVNSTNYYYTTVSGRNKQDTVYGLFMCNGYMEKCGECVNTSIQTLKSKCIFNKEAIIWTHECLVRYTNMFFFNTTKKSPSWCVKNSEDYEGELDIFNRMLSSLMKDLLTEAIEAPMGSVKFAVKKKSISQEKHFFGFAQCVPYLSKENCRKCLRDAMDFLQTCARGKIGGRVIYPSCIVRYDHYLFFPLPRGKRKNLGVIASIIFFHGLVPVIVLFFVCYLLHRELRKDLKHRKGNSNITFGLGGEEISTELNSLQFELSTIQEATNKFSDDNKIGEGGFGAVYKGVFSNGLEIAVKRLKKNSSQGATEFKKEVLLISKLQHRNLVRLLGFCVQRNEKILIYEFVHNESLDYYLFSPQNHRKLSWSERYEIIRGIARGILYLHEDSHLNIIHCDLKPSNILLDNKMNAKISDFGLARIISIDQMQGNTSIISGTYGYMSPEYAMLGQFSMKSDVFSFGVIILEIISGKRNVDGNGKDLDDLLSHAWKKWKKNRVLELLDPSLQHSFSETEINKCVQIGLLCVQGNPDQRPIMAKIAFYFSCDQLGKLPLPQEPAFFMRGKTETKVISRKTLSLV 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00207 636 ProSiteProfiles Gnk2-homologous domain profile. 139 248 IPR002902 -
Viun6g00207 636 Gene3D Transferase(Phosphotransferase) domain 1 407 605 - -
Viun6g00207 636 Pfam Protein tyrosine and serine/threonine kinase 334 598 IPR001245 GO:0004672|GO:0006468
Viun6g00207 636 FunFam cysteine-rich receptor-like protein kinase 10 407 607 - -
Viun6g00207 636 CDD STKc_IRAK 337 598 - -
Viun6g00207 636 ProSiteProfiles Gnk2-homologous domain profile. 31 133 IPR002902 -
Viun6g00207 636 SMART serkin_6 331 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00207 636 ProSiteProfiles Protein kinase domain profile. 331 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00207 636 FunFam Cysteine-rich receptor-like protein kinase 10 292 406 - -
Viun6g00207 636 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Viun6g00207 636 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 50 622 - -
Viun6g00207 636 Pfam Salt stress response/antifungal 149 246 IPR002902 -
Viun6g00207 636 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Viun6g00207 636 Gene3D - 29 133 IPR038408 -
Viun6g00207 636 Gene3D - 142 248 IPR038408 -
Viun6g00207 636 SUPERFAMILY Protein kinase-like (PK-like) 316 610 IPR011009 -
Viun6g00207 636 Gene3D Phosphorylase Kinase; domain 1 305 406 - -
Viun6g00207 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00207 Viun-Chr6 4950034 4961268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00207 9 626 Receptor kinase-like Gene Family AT4G05200 40.741 1.27e-165 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g00207 PK_Tyr_Ser-Thr 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00207 - - mtr:11443024 814.683