Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00206 ATGGAAGCCAGATTGGGGTTTGTGGTGGTTCCCCTTGTGCTATTTTGTCTTGTGTTGGCAGCAGAATCGGCGTGCAGGCAGGGTTGCTCTCTGGCGCTGGGCTCCTACTACATGTGGTCGGGCTCCAACCTCACCTACATCTCCGAGGTCATGTCCTCTCCCCTTCTCACCACTCCCGACGACATAGTCCTCTACAACAAGGACACCATCCCCAACAAGGACAGCGTTCAGGCCTTCATAAGGGTCAACGTCCCCTTCCCTTGCGACTGCATCGACGGTCAGTTTCTCGCCCACACTTTCCAGTACGATGTTCAAACGCAGGACACCTACGAGTATGTCGCCAGGACCGTCTTCTCCAACCTCACCGATGTTACCTGGCTCAGGAGGTTTAACTCCTATGAACCGAATAACATTCCCGACACCGGCACGCTCAACGTCACGGTGAATTGCTCTTGTGGGAACACCGATGTTGCCGATTATGGCTTGTTCATCACGTACCCTCTCAGAACCGGGGAGACTCTCGGTTCGGTGGCTGCTGATGTCAGCCTTGACTCGGGGTTGCTGCAGAGGTACAACCCTGACGTCAATTTCAACCAGGGGAGTGGACTCGTTTATATTCCCGGAAAAGATCAAAATGGTAGCTATGTGTTTTTGCCGTCCAGTTCAGGAGGTCTTGCTGGTGGGGCTATTGCTGGAATCGCTGTTGGAGTTGTGGCAGTTCTTCTGGTATTAGGAGTTGTTATATATTTTAGAATATTCAGGATGAAGATACAGAAGGAAGAACTTTCACGAGATTCTAGTGCACTATTTGCTCAAGATGGGAAGGATGAAGCTTCTCGTAGTAGTGCGCATGAAACTTTAGGACCTGGTGGTCCTGCCGCCATCACAGGCATAAAAGTGGACAAATCGGTGGAATTCACATATGAGGAACTGGCAACTGCCACAGATAACTTTAGTTTGGCAAATAAAATTGGTCAAGGAGGTTTTGGGTCAGTCTATTATGCGGAGCTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCTTGACACGTGTTCATCATTTAAACCTGGTGCGGCTGATTGGGTATAGCATCGAGGGCTCTCTTTTCCTTGTCTATGAATACATTGAAAATGGAAACCTAAGTCAACATCTGCGTGGTTCAGGTAGTAGAGAACCACTGCCATGGGCTACACGTGTGCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATTCACGAGCATACAGTGCCTGTATATATTCATCGTGACATAAAGTCAGCAAATATATTAATAGACAAAAACTTCCGGGGCAAGGTTGCTGATTTTGGATTAACCAAACTTACAGAAGTTGGAAGTTCATCACTTCCTACTGGTCGTCTTGTTGGAACATTTGGATACATGCCACCAGAGTATGCTCAATATGGGGATGTTTCTCCCAAAGTAGACGTGTATGCTTTTGGAGTTGTTCTTTATGAACTCATTTCGGCTAAGGAAGCAATTGTCAAGACAAACGACTCTGTTACTGACTCAAAAGGCCTAGTAGCTCTGTTTGATGGAGTTCTTGGTCAGCCGGATCCCACTGAAGATCTCTGCAAACTAGTTGATCCAAGGCTTGGGGATAACTACCCAATTGACTCTGTCCGCAAGATGGCACAGCTAGCCAAAGCATGTACACAAGACAATCCCCAACTACGTCCAAGTATGAGATCCATTGTGGTTGCGCTGATGACACTTTCTTCAACTACAGACGAGTGGGATGTTGGTTCCTTCTATGAAAATCAAAATCTTGTGAATCTAATGTCAGGAAGATAG 1857 0.468 MEARLGFVVVPLVLFCLVLAAESACRQGCSLALGSYYMWSGSNLTYISEVMSSPLLTTPDDIVLYNKDTIPNKDSVQAFIRVNVPFPCDCIDGQFLAHTFQYDVQTQDTYEYVARTVFSNLTDVTWLRRFNSYEPNNIPDTGTLNVTVNCSCGNTDVADYGLFITYPLRTGETLGSVAADVSLDSGLLQRYNPDVNFNQGSGLVYIPGKDQNGSYVFLPSSSGGLAGGAIAGIAVGVVAVLLVLGVVIYFRIFRMKIQKEELSRDSSALFAQDGKDEASRSSAHETLGPGGPAAITGIKVDKSVEFTYEELATATDNFSLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGSREPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTNDSVTDSKGLVALFDGVLGQPDPTEDLCKLVDPRLGDNYPIDSVRKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTDEWDVGSFYENQNLVNLMSGR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00206 618 Pfam Protein tyrosine and serine/threonine kinase 320 589 IPR001245 GO:0004672|GO:0006468
Viun6g00206 618 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 604 IPR044812 GO:0019199|GO:0045087
Viun6g00206 618 FunFam PTI1-like tyrosine-protein kinase 3 389 604 - -
Viun6g00206 618 FunFam LysM receptor kinase 2 297 388 - -
Viun6g00206 618 ProSiteProfiles Protein kinase domain profile. 318 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00206 618 SMART serkin_6 318 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00206 618 Gene3D Transferase(Phosphotransferase) domain 1 389 610 - -
Viun6g00206 618 CDD STKc_IRAK 324 587 - -
Viun6g00206 618 Gene3D Phosphorylase Kinase; domain 1 303 388 - -
Viun6g00206 618 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Viun6g00206 618 SUPERFAMILY Protein kinase-like (PK-like) 301 590 IPR011009 -
Viun6g00206 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00206 Viun-Chr6 4930624 4938504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00206 1 618 Receptor kinase-like Gene Family AT3G21630 57.895 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun6g00206 PK_Tyr_Ser-Thr 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00206 - K13429 gmx:100777781 1036.56