Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00205 ATGGAAGCCAGATTGGGGTTTGTGGTGGTTCCCCTTGTGCTATTTTGTCTTGTGTTGGCAGCAGAATCGGCGTGCAGGCAGGGTTGCTCTCTGGCGCTGGGCTCCTACTACATGTGGTCGGGCTCCAACCTCACCTACATCTCCGAGGTCATGTCCTCTCCCCTTCTCACCACTCCCGACGACATAGTCCTCTACAACAAGGACACCATCCCCAACAAGGACAGCGTTCAGGCCTTCATAAGGGTCAACGTCCCCTTCCCTTGCGACTGCATCGACGGTCAGTTTCTCGCCCACACTTTCCAGTACGATGTTCAAACGCAGGACACCTACGAGTATGTCGCCAGGACCGTCTTCTCCAACCTCACCGATGTTACCTGGCTCAGGAGGTTTAACTCCTATGAACCGAATAACATTCCCGACACCGGCACGCTCAACGTCACGGTGAATTGCTCTTGTGGGAACACCGATGTTGCCGATTATGGCTTGTTCATCACGTACCCTCTCAGAACCGGGGAGACTCTCGGTTCGGTGGCTGCTGATGTCAGCCTTGACTCGGGGTTGCTGCAGAGGTACAACCCTGACGTCAATTTCAACCAGGGGAGTGGACTCGTTTATATTCCCGGAAAAGATCAAAATGGTAGCTATGTGTTTTTGCCGTCCAGTTCAGGAGCAGGTCTTGCTGGTGGGGCTATTGCTGGAATCGCTGTTGGAGTTGTGGCAGTTCTTCTGGTATTAGGAGTTGTTATATATTTTAGAATATTCAGGATGAAGATACAGAAGGAAGAACTTTCACGAGATTCTAGTGCACTATTTGCTCAAGATGGGAAGGATGAAGCTTCTCGTAGTAGTGCGCATGAAACTTTAGGACCTGGTGGTCCTGCCGCCATCACAGGCATAAAAGTGGACAAATCGGTGGAATTCACATATGAGGAACTGGCAACTGCCACAGATAACTTTAGTTTGGCAAATAAAATTGGTCAAGGAGGTTTTGGGTCAGTCTATTATGCGGAGCTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCTTGACACGTGTTCATCATTTAAACCTGGTGCGGCTGATTGGGTATAGCATCGAGGGCTCTCTTTTCCTTGTCTATGAATACATTGAAAATGGAAACCTAAGTCAACATCTGCGTGGTTCAGGTAGTAGAGAACCACTGCCATGGGCTACACGTGTGCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATTCACGAGCATACAGTGCCTGTATATATTCATCGTGACATAAAGTCAGCAAATATATTAATAGACAAAAACTTCCGGGGCAAGGTTGCTGATTTTGGATTAACCAAACTTACAGAAGTTGGAAGTTCATCACTTCCTACTGGTCGTCTTGTTGGAACATTTGGATACATGCCACCAGAGTATGCTCAATATGGGGATGTTTCTCCCAAAGTAGACGTGTATGCTTTTGGAGTTGTTCTTTATGAACTCATTTCGGCTAAGGAAGCAATTGTCAAGACAAACGACTCTGTTACTGACTCAAAAGGCCTAGTAGCTCTGTTTGATGGAGTTCTTGGTCAGCCGGATCCCACTGAAGATCTCTGCAAACTAGTTGATCCAAGGCTTGGGGATAACTACCCAATTGACTCTGTCCGCAAGATGGCACAGCTAGCCAAAGCATGTACACAAGACAATCCCCAACTACGTCCAAGTATGAGATCCATTGTGGTTGCGCTGATGACACTTTCTTCAACTACAGACGAGTGGGATGTTGGTTCCTTCTATGAAAATCAAAATCTTGTGAATCTAATGTCAGGAAGATAG 1860 0.4683 MEARLGFVVVPLVLFCLVLAAESACRQGCSLALGSYYMWSGSNLTYISEVMSSPLLTTPDDIVLYNKDTIPNKDSVQAFIRVNVPFPCDCIDGQFLAHTFQYDVQTQDTYEYVARTVFSNLTDVTWLRRFNSYEPNNIPDTGTLNVTVNCSCGNTDVADYGLFITYPLRTGETLGSVAADVSLDSGLLQRYNPDVNFNQGSGLVYIPGKDQNGSYVFLPSSSGAGLAGGAIAGIAVGVVAVLLVLGVVIYFRIFRMKIQKEELSRDSSALFAQDGKDEASRSSAHETLGPGGPAAITGIKVDKSVEFTYEELATATDNFSLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGSREPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTNDSVTDSKGLVALFDGVLGQPDPTEDLCKLVDPRLGDNYPIDSVRKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTDEWDVGSFYENQNLVNLMSGR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00205 619 FunFam LysM receptor kinase 2 298 389 - -
Viun6g00205 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Viun6g00205 619 CDD STKc_IRAK 325 588 - -
Viun6g00205 619 SMART serkin_6 319 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00205 619 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Viun6g00205 619 FunFam PTI1-like tyrosine-protein kinase 3 390 605 - -
Viun6g00205 619 ProSiteProfiles Protein kinase domain profile. 319 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00205 619 Pfam Protein tyrosine and serine/threonine kinase 321 590 IPR001245 GO:0004672|GO:0006468
Viun6g00205 619 Gene3D Transferase(Phosphotransferase) domain 1 390 611 - -
Viun6g00205 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 605 IPR044812 GO:0019199|GO:0045087
Viun6g00205 619 Gene3D Phosphorylase Kinase; domain 1 304 389 - -
Viun6g00205 619 SUPERFAMILY Protein kinase-like (PK-like) 302 591 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00205 Viun-Chr6 4930624 4938507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00205 1 619 Receptor kinase-like Gene Family AT3G21630 57.895 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun6g00205 PK_Tyr_Ser-Thr 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00205 - K13429 gmx:100777781 1036.56