Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00200 ATGCTCCCTTTGCGTCCAGAAGCACAGGTTAGAGGACTACAAACGTCTCTGTCTCTAGTTTCTTCAGATCCTCTCCGGTCTCCTGATGAACCTGGATCAAACTCTGACAATCTCCGTGAATCACCGGCTGAGAGTGCAAGTTCTCAAGAAACTTGGCCTACAGCTGCAGCAAAGAAGATGGAGAATAGAAAGACGGAGATTAATAGCCTTGAGCAGAAAGTGATTCACCGTGTTTCTGGTGCTGGCAAAGTTACTCTGCAAGACATTGCAAGAGAAAGTGTGGGAACGATATGTGAAAAAATGCGTTGTCTACCTCCGGTATATCTCGAAGAACTGAAAAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGCATCGCAGCACAGAGAGGAATTTTTCATTTTGCAGAAGCTTGTTCAGAATAGAGCTGATTTGACAGAAAAGACATTGGTGAGAGCTCATCGAGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAATCTATCACAGACTTCCCTGATTGAGATCTTTGGTTATAAGAGGTGCAGAAACATAGCGTGCCAAAACCTGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACCAACACTAATGGTTTCTGCAATCTGTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGACGTGAATACTTGCCGCTGGATTGGATGTGACTTGTGTTCTCACTGGACTCACACTGATTGTGCCATTCGCGAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGTGAAGCAGGACCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGGTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCTGCCTCGTGGGATGGAGAGGCCCTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGCAATAAAGAACCCCGAGGGAGGAAGCTATTTTGGAAGTGTGGCGATATCATAGAAAAATTGAAAACCAAAAACATGGATTCAAAGGCTGCTTCCCGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTACAGAAGGCCTGGAGAATGGAGAAAGTGGAAGGTCGATTGCTCCGCAGGACGCATGCAATAGAATTGCTGAAGTGGTGGCGGAGGCCATACGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCATGGATCTGGAAGCTTGCGACCATGAACTTGCTGACAAGTCAAGGGAAGTGGCAGAGTTGAAGATGGAGAGGCAGAAAAAGAAGCTGCAGATAGAAGAGCTGGAGAAAATTGTGAGGCTAAAGAATGCAGAGGCTGAAATGTTTCAGGTGAAGGCTAACGAGGCTAAACAAGAGGCCGAGAGACTTCAGAGGATTGCTCTTGCCAAGCAAGATAAATCAGAGGAAGAATTTACTAGCAACTACTTGAAGCAACGATTAAACGAGGCCGAGGCTGAGAAGCAGTATCTTTACAAGAAGATCAAACTGCAAGATAGTTCTCGCAGTAGTGGTGGTGATCCCTCTCAGATGCTGATATATTCCAAAATCCATGATCTTCTGTACAGTGTTCCTACCAAACCAGAAACTCAGGGTAAAGAGCACCACCCTTTTGGGACAAGTCCCTGA 1683 0.451 MLPLRPEAQVRGLQTSLSLVSSDPLRSPDEPGSNSDNLRESPAESASSQETWPTAAAKKMENRKTEINSLEQKVIHRVSGAGKVTLQDIARESVGTICEKMRCLPPVYLEELKNGLRVILEGGNASQHREEFFILQKLVQNRADLTEKTLVRAHRVQLEILVAINTGIQGFLHPSINLSQTSLIEIFGYKRCRNIACQNLLPADDCTCEICTNTNGFCNLCMCVICNKFDFDVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSSKSEAGPSEMVFRCQACNRTSELVGWVKDVFQHCAASWDGEALMRELDYVSRIFHGNKEPRGRKLFWKCGDIIEKLKTKNMDSKAASRAILMFFQELEVDSTEGLENGESGRSIAPQDACNRIAEVVAEAIRKMEMVADEKMRMFKKARMDLEACDHELADKSREVAELKMERQKKKLQIEELEKIVRLKNAEAEMFQVKANEAKQEAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYKKIKLQDSSRSSGGDPSQMLIYSKIHDLLYSVPTKPETQGKEHHPFGTSP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00200 560 Pfam Coiled-coil region of Oberon 410 539 IPR032535 -
Viun6g00200 560 PIRSF UCP025218 3 547 - -
Viun6g00200 560 SMART PHD_3 222 282 IPR001965 -
Viun6g00200 560 CDD PHD_OBE1_like 222 281 IPR047578 -
Viun6g00200 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 229 249 IPR004082 -
Viun6g00200 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 302 321 IPR004082 -
Viun6g00200 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 157 172 IPR004082 -
Viun6g00200 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 100 122 IPR004082 -
Viun6g00200 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 183 204 IPR004082 -
Viun6g00200 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 445 465 IPR004082 -
Viun6g00200 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 142 157 IPR004082 -
Viun6g00200 560 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 484 506 IPR004082 -
Viun6g00200 560 Pfam PHD - plant homeodomain finger protein 192 315 IPR032881 -
Viun6g00200 560 MobiDBLite consensus disorder prediction 11 55 - -
Viun6g00200 560 MobiDBLite consensus disorder prediction 1 55 - -
Viun6g00200 560 Coils Coil 416 485 - -
Viun6g00200 560 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 40 541 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00200 Viun-Chr6 4750023 4753261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00200 192 294 PHD Gene Family AT5G57380 29.808 2.17e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00200 - - gmx:100781890 978.008