Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00199 ATGCTCCCTTTGCGTCCAGAAGCACAGGTTAGAGGACTACAAACGTCTCTGTCTCTAGTTTCTTCAGATCCTCTCCGGTCTCCTGATGAACCTGGATCAAACTCTGACAATCTCCGTGAATCACCGGCTGAGAGTGCAAGTTCTCAAGAAACTTGGCCTACAGCTGCAGCAAAGAAGATGGAGAATAGAAAGACGGAGATTAATAGCCTTGAGCAGAAAGTGATTCACCGTGTTTCTGGTGCTGGCAAAGTTACTCTGCAAGACATTGCAAGAGAAAGTGTGGGAACGATATGTGAAAAAATGCGTTGTCTACCTCCGGTATATCTCGAAGAACTGAAAAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGCATCGCAGCACAGAGAGGAATTTTTCATTTTGCAGAAGCTTGTTCAGAATAGAGCTGATTTGACAGAAAAGACATTGGTGAGAGCTCATCGAGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAATCTATCACAGACTTCCCTGATTGAGATCTTTGGTTATAAGAGGTGCAGAAACATAGCGTGCCAAAACCTGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACCAACACTAATGGTTTCTGCAATCTGTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGACGTGAATACTTGCCGCTGGATTGGATGTGACTTGTGTTCTCACTGGACTCACACTGATTGTGCCATTCGCGAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGTGAAGCAGGACCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGGTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCTGCCTCGTGGGATGGAGAGGCCCTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGCAATAAAGAACCCCGAGGGAGGAAGCTATTTTGGAAGTGTGGCGATATCATAGAAAAATTGAAAACCAAAAACATGGATTCAAAGGCTGCTTCCCGGGCAATATTGATGTTTTTCCAAGAAGGCCTGGAGAATGGAGAAAGTGGAAGGTCGATTGCTCCGCAGGACGCATGCAATAGAATTGCTGAAGTGGTGGCGGAGGCCATACGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCATGGATCTGGAAGCTTGCGACCATGAACTTGCTGACAAGTCAAGGGAAGTGGCAGAGTTGAAGATGGAGAGGCAGAAAAAGAAGCTGCAGATAGAAGAGCTGGAGAAAATTGTGAGGCTAAAGAATGCAGAGGCTGAAATGTTTCAGGTGAAGGCTAACGAGGCTAAACAAGAGGCCGAGAGACTTCAGAGGATTGCTCTTGCCAAGCAAGATAAATCAGAGGAAGAATTTACTAGCAACTACTTGAAGCAACGATTAAACGAGGCCGAGGCTGAGAAGCAGTATCTTTACAAGAAGATCAAACTGCAAGATAGTTCTCGCAGTAGTGGTGGTGATCCCTCTCAGATGCTGATATATTCCAAAATCCATGATCTTCTGTACAGTGTTCCTACCAAACCAGAAACTCAGGGTAAAGAGCACCACCCTTTTGGGACAAGTCCCTGA 1662 0.4501 MLPLRPEAQVRGLQTSLSLVSSDPLRSPDEPGSNSDNLRESPAESASSQETWPTAAAKKMENRKTEINSLEQKVIHRVSGAGKVTLQDIARESVGTICEKMRCLPPVYLEELKNGLRVILEGGNASQHREEFFILQKLVQNRADLTEKTLVRAHRVQLEILVAINTGIQGFLHPSINLSQTSLIEIFGYKRCRNIACQNLLPADDCTCEICTNTNGFCNLCMCVICNKFDFDVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSSKSEAGPSEMVFRCQACNRTSELVGWVKDVFQHCAASWDGEALMRELDYVSRIFHGNKEPRGRKLFWKCGDIIEKLKTKNMDSKAASRAILMFFQEGLENGESGRSIAPQDACNRIAEVVAEAIRKMEMVADEKMRMFKKARMDLEACDHELADKSREVAELKMERQKKKLQIEELEKIVRLKNAEAEMFQVKANEAKQEAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYKKIKLQDSSRSSGGDPSQMLIYSKIHDLLYSVPTKPETQGKEHHPFGTSP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00199 553 Coils Coil 409 478 - -
Viun6g00199 553 SMART PHD_3 222 282 IPR001965 -
Viun6g00199 553 CDD PHD_OBE1_like 222 281 IPR047578 -
Viun6g00199 553 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 438 458 IPR004082 -
Viun6g00199 553 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 157 172 IPR004082 -
Viun6g00199 553 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 477 499 IPR004082 -
Viun6g00199 553 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 229 249 IPR004082 -
Viun6g00199 553 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 100 122 IPR004082 -
Viun6g00199 553 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 142 157 IPR004082 -
Viun6g00199 553 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 183 204 IPR004082 -
Viun6g00199 553 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 302 321 IPR004082 -
Viun6g00199 553 MobiDBLite consensus disorder prediction 11 55 - -
Viun6g00199 553 Pfam PHD - plant homeodomain finger protein 192 315 IPR032881 -
Viun6g00199 553 MobiDBLite consensus disorder prediction 1 55 - -
Viun6g00199 553 Pfam Coiled-coil region of Oberon 403 532 IPR032535 -
Viun6g00199 553 PIRSF UCP025218 3 540 - -
Viun6g00199 553 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 40 534 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00199 Viun-Chr6 4750023 4753261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00199 192 294 PHD Gene Family AT5G57380 29.808 2.20e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00199 - - gmx:100781890 961.829