Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00192 ATGTATGGATTTGGGAATTGGAATGAAGTCGCAGAATATGTTGGAACTAAAAGCAAATCTCAGTGTATTGACCACTATAATGTTGTATATATGAATTCACCATGTTTTCCTCTCCCGGATTTGTCTCATGTTATGGGAAAGAGCAGGGATGAATTGTTTGCCATGGTTAAGGGTCATGAAGCCAAAAAAGAATTTTCTCTAACTGCTGAGCTTATGCTGAAAGAAGAAGCTCCCTTCTCTGATGTAGTAAGTTATGAAGAAACAAAGAAGGTAGAAATCAATAATCTAGAAATCTCCAGATTAACCTCAGGTTCAACATGTGGAAAATCTTGCTCAAGTACAGTTAAGAACTCTTCCTACTTGAGCCAAAGTAATGATGATGTCAAGGTTGAAGGAGAGTCTCGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGGGAAGACATGCTTTCTATCACAGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTTGATGTTGAATACGACAATGATGCTGAGCAAGTGTTGGCTGATATGGAATTTAAGAACACTGATACCGAAGCTGAACATCAAATGAAACTTCACGTGCTCCATATCTATTCGAAAAGGTTAAATGAGCGGAAGCGAAGAAAGCATTTTGTACTTGAAAGGGAGTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATATGTCAGCATTACAAGGTCTTCATGCGGTTTCACTCAAAAGAACAACATCAGGATTTTCTAAAAAATATTATTGAAGAACTCAGACTTGTCAGAAGAATACAAGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCTGGTGATGGTTATCGCTTTATCGAGCAAAAGAGGACAAAGGAAGCTGAATCAAGTTCCTGTAAAGAAAGTGGTCAGATTGGAACCAGTGCCAACACATTACAGAGGCCAAATAATCTCAAAGGAGAACTTGACAGTAGCCCACGGGGTCTTCAAAAGGGGACTGCAGCACTATTTGCTGATTCCGCCATACAAGCCATCACAAAGTCGCTAGAAGAATGGGATATTAGTGGATTTGCAGGAGCTGAATTTCTATCTGAATCGGAAATAAAACTTTGCAATGAGATCAGAATACTGCCGTCACACTATCTCAACATGAAGCAGACCATTTCCTTAGAAATTTCGAAGGGAAGTGTGACCAAGAAATCTGATGCACATAAACTCTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTATGACATGCTTGTGAAAAAAGGAGTTCTGCAAACATAA 1305 0.3916 MYGFGNWNEVAEYVGTKSKSQCIDHYNVVYMNSPCFPLPDLSHVMGKSRDELFAMVKGHEAKKEFSLTAELMLKEEAPFSDVVSYEETKKVEINNLEISRLTSGSTCGKSCSSTVKNSSYLSQSNDDVKVEGESRSIGEKKPKLSGEDMLSITELSGYSFKREEFDVEYDNDAEQVLADMEFKNTDTEAEHQMKLHVLHIYSKRLNERKRRKHFVLERELLYPDPFEKSLLPEELQICQHYKVFMRFHSKEQHQDFLKNIIEELRLVRRIQDLQEARIAGCVTAGDGYRFIEQKRTKEAESSSCKESGQIGTSANTLQRPNNLKGELDSSPRGLQKGTAALFADSAIQAITKSLEEWDISGFAGAEFLSESEIKLCNEIRILPSHYLNMKQTISLEISKGSVTKKSDAHKLFKVEPSKVDRVYDMLVKKGVLQT 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00192 434 Gene3D - 348 434 IPR036388 -
Viun6g00192 434 MobiDBLite consensus disorder prediction 301 331 - -
Viun6g00192 434 ProSiteProfiles SANT domain profile. 1 34 IPR017884 -
Viun6g00192 434 ProSiteProfiles SWIRM domain profile. 348 434 IPR007526 GO:0005515
Viun6g00192 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 34 IPR017930 -
Viun6g00192 434 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 429 - -
Viun6g00192 434 Gene3D - 1 33 - -
Viun6g00192 434 SUPERFAMILY Homeodomain-like 1 33 IPR009057 -
Viun6g00192 434 MobiDBLite consensus disorder prediction 128 142 - -
Viun6g00192 434 SUPERFAMILY Homeodomain-like 350 433 IPR009057 -
Viun6g00192 434 CDD SANT 2 27 IPR001005 -
Viun6g00192 434 MobiDBLite consensus disorder prediction 122 142 - -
Viun6g00192 434 FunFam Transcriptional adapter 2 349 433 - -
Viun6g00192 434 PIRSF Txn_adaptor_ADA2 1 434 IPR016827 GO:0003713|GO:0006357|GO:0035065
Viun6g00192 434 MobiDBLite consensus disorder prediction 303 325 - -
Viun6g00192 434 Pfam Myb-like DNA-binding domain 2 27 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00192 Viun-Chr6 4481094 4516902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00192 2 431 EF-hand Containing Proteins AT3G07740 51.142 2.20e-140 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g00192 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00192 K11314 - gmx:100779424 711.064