Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00191 ATGGGTCGCTGCCGTGCTGCGTCGGCGTCGGGCCCCGCCGACGATGACCCTAACCACAGGTTAAAGAGAAAAAGGGCTGCTTCAGAAACTTTACCTACAGGCCAAGGTATAACTAATAGCAAGGTATCTCTTTATCACTGTAATTATTGTAACAAAGATATTTCGGGGAGGATTCGCATCAAGTGTGCTGTCTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCCCACAAAAGCAATCATCCGTATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATCTTACTTCTAGAGGCTATTGAGATGTATGGATTTGGGAATTGGAATGAAGTCGCAGAATATGTTGGAACTAAAAGCAAATCTCAGTGTATTGACCACTATAATGTTGTATATATGAATTCACCATGTTTTCCTCTCCCGGATTTGTCTCATGTTATGGGAAAGAGCAGGGATGAATTGTTTGCCATGGTTAAGGGTCATGAAGCCAAAAAAGAATTTTCTCTAACTGCTGAGCTTATGCTGAAAGAAGAAGCTCCCTTCTCTGATGTAGTAAGTTATGAAGAAACAAAGAAGGTAGAAATCAATAATCTAGAAATCTCCAGATTAACCTCAGGTTCAACATGTGGAAAATCTTGCTCAAGTACAGTTAAGAACTCTTCCTACTTGAGCCAAAGTAATGATGATGTCAAGGTTGAAGGAGAGTCTCGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGGGAAGACATGCTTTCTATCACAGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTTGATGTTGAATACGACAATGATGCTGAGCAAGTGTTGGCTGATATGGAATTTAAGAACACTGATACCGAAGCTGAACATCAAATGAAACTTCACGTGCTCCATATCTATTCGAAAAGGTTAAATGAGCGGAAGCGAAGAAAGCATTTTGTACTTGAAAGGGAGTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATATGTCAGCATTACAAGGTCTTCATGCGGTTTCACTCAAAAGAACAACATCAGGATTTTCTAAAAAATATTATTGAAGAACTCAGACTTGTCAGAAGAATACAAGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCTGGTGATGGTTATCGCTTTATCGAGCAAAAGAGGACAAAGGAAGCTGAATCAAGTTCCTGTAAAGAAAGTGGTCAGATTGGAACCAGTGCCAACACATTACAGAGGCCAAATAATCTCAAAGGAGAACTTGACAGTAGCCCACGGGGTCTTCAAAAGGGGACTGCAGCACTATTTGCTGATTCCGCCATACAAGCCATCACAAAGTCGCTAGAAGAATGGGATATTAGTGGATTTGCAGGAGCTGAATTTCTATCTGAATCGGAAATAAAACTTTGCAATGAGATCAGAATACTGCCGTCACACTATCTCAACATGAAGCAGACCATTTCCTTAGAAATTTCGAAGGGAAGTGTGACCAAGAAATCTGATGCACATAAACTCTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTATGACATGCTTGTGAAAAAAGGAGTTCTGCAAACATAA 1659 0.4051 MGRCRAASASGPADDDPNHRLKRKRAASETLPTGQGITNSKVSLYHCNYCNKDISGRIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADEEILLLEAIEMYGFGNWNEVAEYVGTKSKSQCIDHYNVVYMNSPCFPLPDLSHVMGKSRDELFAMVKGHEAKKEFSLTAELMLKEEAPFSDVVSYEETKKVEINNLEISRLTSGSTCGKSCSSTVKNSSYLSQSNDDVKVEGESRSIGEKKPKLSGEDMLSITELSGYSFKREEFDVEYDNDAEQVLADMEFKNTDTEAEHQMKLHVLHIYSKRLNERKRRKHFVLERELLYPDPFEKSLLPEELQICQHYKVFMRFHSKEQHQDFLKNIIEELRLVRRIQDLQEARIAGCVTAGDGYRFIEQKRTKEAESSSCKESGQIGTSANTLQRPNNLKGELDSSPRGLQKGTAALFADSAIQAITKSLEEWDISGFAGAEFLSESEIKLCNEIRILPSHYLNMKQTISLEISKGSVTKKSDAHKLFKVEPSKVDRVYDMLVKKGVLQT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00191 552 Gene3D - 38 93 IPR043145 -
Viun6g00191 552 FunFam Transcriptional adapter 38 93 - -
Viun6g00191 552 MobiDBLite consensus disorder prediction 246 260 - -
Viun6g00191 552 MobiDBLite consensus disorder prediction 240 260 - -
Viun6g00191 552 SMART zz_5 41 86 IPR000433 GO:0008270
Viun6g00191 552 MobiDBLite consensus disorder prediction 1 34 - -
Viun6g00191 552 SUPERFAMILY RING/U-box 45 108 - -
Viun6g00191 552 ProSiteProfiles Zinc finger ZZ-type profile. 42 98 IPR000433 GO:0008270
Viun6g00191 552 CDD ZZ_ADA2 45 93 IPR041983 -
Viun6g00191 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 152 IPR017930 -
Viun6g00191 552 FunFam Transcriptional adapter 2 467 551 - -
Viun6g00191 552 ProSiteProfiles SWIRM domain profile. 466 552 IPR007526 GO:0005515
Viun6g00191 552 PIRSF Txn_adaptor_ADA2 33 552 IPR016827 GO:0003713|GO:0006357|GO:0035065
Viun6g00191 552 MobiDBLite consensus disorder prediction 419 449 - -
Viun6g00191 552 ProSitePatterns Zinc finger ZZ-type signature. 47 74 IPR000433 GO:0008270
Viun6g00191 552 CDD SANT 105 145 IPR001005 -
Viun6g00191 552 Pfam Zinc finger, ZZ type 45 85 IPR000433 GO:0008270
Viun6g00191 552 Gene3D - 99 150 - -
Viun6g00191 552 MobiDBLite consensus disorder prediction 421 443 - -
Viun6g00191 552 ProSiteProfiles SANT domain profile. 100 152 IPR017884 -
Viun6g00191 552 FunFam Transcriptional adapter 2 98 150 - -
Viun6g00191 552 Pfam Myb-like DNA-binding domain 104 145 IPR001005 -
Viun6g00191 552 SUPERFAMILY Homeodomain-like 98 151 IPR009057 -
Viun6g00191 552 Gene3D - 466 552 IPR036388 -
Viun6g00191 552 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 44 547 - -
Viun6g00191 552 SUPERFAMILY Homeodomain-like 468 551 IPR009057 -
Viun6g00191 552 ProSiteProfiles Myb-like domain profile. 105 148 IPR001005 -
Viun6g00191 552 SMART sant 101 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00191 Viun-Chr6 4481094 4518002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00191 1 549 EF-hand Containing Proteins AT3G07740 51.923 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g00191 Myb_DNA-binding 6.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00191 K11314 - gmx:100779424 893.649