Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00190 ATGGGTCGCTGCCGTGCTGCGTCGGCGTCGGGCCCCGCCGACGATGACCCTAACCACAGGTTAAAGAGAAAAAGGGCTGCTTCAGAAACTTTACCTACAGGCCAAGGTATAACTAATAGCAAGGTATCTCTTTATCACTGTAATTATTGTAACAAAGATATTTCGGGGAGGATTCGCATCAAGTGTGCTGTCTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCCCACAAAAGCAATCATCCGTATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATCTTACTTCTAGAGGCTATTGAGATGTATGGATTTGGGAATTGGAATGAAGTCGCAGAATATGTTGGAACTAAAAGCAAATCTCAGTGTATTGACCACTATAATGTTGTATATATGAATTCACCATGTTTTCCTCTCCCGGATTTGTCTCATGTTATGGGAAAGAGCAGGGATGAATTGTTTGCCATGGTTAAGGGTCATGAAGCCAAAAAAGAATTTTCTCTAACTGCTGAGCTTATGCTGAAAGAAGAAGCTCCCTTCTCTGATGTAGTAAGTTATGAAGAAACAAAGAAGGTAGAAATCAATAATCTAGAAATCTCCAGATTAACCTCAGGTGGAAAATCTTGCTCAAGTACAGTTAAGAACTCTTCCTACTTGAGCCAAAGTAATGATGATGTCAAGGTTGAAGGAGAGTCTCGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGGGAAGACATGCTTTCTATCACAGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTTGATGTTGAATACGACAATGATGCTGAGCAAGTGTTGGCTGATATGGAATTTAAGAACACTGATACCGAAGCTGAACATCAAATGAAACTTCACGTGCTCCATATCTATTCGAAAAGGTTAAATGAGCGGAAGCGAAGAAAGCATTTTGTACTTGAAAGGGAGTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATATGTCAGCATTACAAGGTCTTCATGCGGTTTCACTCAAAAGAACAACATCAGGATTTTCTAAAAAATATTATTGAAGAACTCAGACTTGTCAGAAGAATACAAGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCTGGTGATGGTTATCGCTTTATCGAGCAAAAGAGGACAAAGGAAGCTGAATCAAGTTCCTGTAAAGAAAGTGGTCAGATTGGAACCAGTGCCAACACATTACAGAGGCCAAATAATCTCAAAGGAGAACTTGACAGTAGCCCACGGGGTCTTCAAAAGGGGACTGCAGCACTATTTGCTGATTCCGCCATACAAGCCATCACAAAGTCGCTAGAAGAATGGGATATTAGTGGATTTGCAGGAGCTGAATTTCTATCTGAATCGGAAATAAAACTTTGCAATGAGATCAGAATACTGCCGTCACACTATCTCAACATGAAGCAGACCATTTCCTTAGAAATTTCGAAGGGAAGTGTGACCAAGAAATCTGATGCACATAAACTCTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTATGACATGCTTGTGAAAAAAGGAGTTCTGCAAACATAA 1650 0.4055 MGRCRAASASGPADDDPNHRLKRKRAASETLPTGQGITNSKVSLYHCNYCNKDISGRIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADEEILLLEAIEMYGFGNWNEVAEYVGTKSKSQCIDHYNVVYMNSPCFPLPDLSHVMGKSRDELFAMVKGHEAKKEFSLTAELMLKEEAPFSDVVSYEETKKVEINNLEISRLTSGGKSCSSTVKNSSYLSQSNDDVKVEGESRSIGEKKPKLSGEDMLSITELSGYSFKREEFDVEYDNDAEQVLADMEFKNTDTEAEHQMKLHVLHIYSKRLNERKRRKHFVLERELLYPDPFEKSLLPEELQICQHYKVFMRFHSKEQHQDFLKNIIEELRLVRRIQDLQEARIAGCVTAGDGYRFIEQKRTKEAESSSCKESGQIGTSANTLQRPNNLKGELDSSPRGLQKGTAALFADSAIQAITKSLEEWDISGFAGAEFLSESEIKLCNEIRILPSHYLNMKQTISLEISKGSVTKKSDAHKLFKVEPSKVDRVYDMLVKKGVLQT 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00190 549 FunFam Transcriptional adapter 38 93 - -
Viun6g00190 549 MobiDBLite consensus disorder prediction 238 257 - -
Viun6g00190 549 SMART zz_5 41 86 IPR000433 GO:0008270
Viun6g00190 549 MobiDBLite consensus disorder prediction 1 34 - -
Viun6g00190 549 FunFam Transcriptional adapter 2 98 150 - -
Viun6g00190 549 FunFam Transcriptional adapter 2 464 548 - -
Viun6g00190 549 SUPERFAMILY RING/U-box 45 108 - -
Viun6g00190 549 ProSiteProfiles Zinc finger ZZ-type profile. 42 98 IPR000433 GO:0008270
Viun6g00190 549 CDD ZZ_ADA2 45 93 IPR041983 -
Viun6g00190 549 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 152 IPR017930 -
Viun6g00190 549 ProSiteProfiles SWIRM domain profile. 463 549 IPR007526 GO:0005515
Viun6g00190 549 Pfam Zinc finger, ZZ type 45 85 IPR000433 GO:0008270
Viun6g00190 549 PIRSF Txn_adaptor_ADA2 33 549 IPR016827 GO:0003713|GO:0006357|GO:0035065
Viun6g00190 549 MobiDBLite consensus disorder prediction 243 257 - -
Viun6g00190 549 Gene3D - 463 549 IPR036388 -
Viun6g00190 549 ProSitePatterns Zinc finger ZZ-type signature. 47 74 IPR000433 GO:0008270
Viun6g00190 549 CDD SANT 105 145 IPR001005 -
Viun6g00190 549 Gene3D - 99 150 - -
Viun6g00190 549 SUPERFAMILY Homeodomain-like 98 151 IPR009057 -
Viun6g00190 549 MobiDBLite consensus disorder prediction 416 437 - -
Viun6g00190 549 ProSiteProfiles SANT domain profile. 100 152 IPR017884 -
Viun6g00190 549 Gene3D - 38 93 IPR043145 -
Viun6g00190 549 SUPERFAMILY Homeodomain-like 465 548 IPR009057 -
Viun6g00190 549 Pfam Myb-like DNA-binding domain 104 145 IPR001005 -
Viun6g00190 549 ProSiteProfiles Myb-like domain profile. 105 148 IPR001005 -
Viun6g00190 549 SMART sant 101 150 IPR001005 -
Viun6g00190 549 MobiDBLite consensus disorder prediction 418 437 - -
Viun6g00190 549 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 44 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00190 Viun-Chr6 4481094 4518002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00190 1 546 EF-hand Containing Proteins AT3G07740 52.197 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g00190 Myb_DNA-binding 6.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00190 K11314 - gmx:100779424 892.108