Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00189 ATGGGTCGCTGCCGTGCTGCGTCGGCGTCGGGCCCCGCCGACGATGACCCTAACCACAGGTTAAAGAGAAAAAGGGCTGCTTCAGAAACTTTACCTACAGGCCAAGGTATAACTAATAGCAAGGTATCTCTTTATCACTGTAATTATTGTAACAAAGATATTTCGGGGAGGATTCGCATCAAGTGTGCTGTCTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCCCACAAAAGCAATCATCCGTATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATCTTACTTCTAGAGGCTATTGAGATGTATGGATTTGGGAATTGGAATGAAGTCGCAGAATATGTTGGAACTAAAAGCAAATCTCAGTGTATTGACCACTATAATGTTGTATATATGAATTCACCATGTTTTCCTCTCCCGGATTTGTCTCATGTTATGGGAAAGAGCAGGGATGAATTGTTTGCCATGGTTAAGGGTCATGAAGCCAAAAAAGAATTTTCTCTAACTGCTGAGCTTATGCTGAAAGAAGAAGCTCCCTTCTCTGATGTAGTAAGTTATGAAGAAACAAAGAAGGTAGAAATCAATAATCTAGAAATCTCCAGATTAACCTCAGTTAAGAACTCTTCCTACTTGAGCCAAAGTAATGATGATGTCAAGGTTGAAGGAGAGTCTCGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGGGAAGACATGCTTTCTATCACAGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTTGATGTTGAATACGACAATGATGCTGAGCAAGTGTTGGCTGATATGGAATTTAAGAACACTGATACCGAAGCTGAACATCAAATGAAACTTCACGTGCTCCATATCTATTCGAAAAGGTTAAATGAGCGGAAGCGAAGAAAGCATTTTGTACTTGAAAGGGAGTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATATGTCAGCATTACAAGGTCTTCATGCGGTTTCACTCAAAAGAACAACATCAGGATTTTCTAAAAAATATTATTGAAGAACTCAGACTTGTCAGAAGAATACAAGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCTGGTGATGGTTATCGCTTTATCGAGCAAAAGAGGACAAAGGAAGCTGAATCAAGTTCCTGTAAAGAAAGTGGTCAGATTGGAACCAGTGCCAACACATTACAGAGGCCAAATAATCTCAAAGGAGAACTTGACAGTAGCCCACGGGGTCTTCAAAAGGGGACTGCAGCACTATTTGCTGATTCCGCCATACAAGCCATCACAAAGTCGCTAGAAGAATGGGATATTAGTGGATTTGCAGGAGCTGAATTTCTATCTGAATCGGAAATAAAACTTTGCAATGAGATCAGAATACTGCCGTCACACTATCTCAACATGAAGCAGACCATTTCCTTAGAAATTTCGAAGGGAAGTGTGACCAAGAAATCTGATGCACATAAACTCTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTATGACATGCTTGTGAAAAAAGGAGTTCTGCAAACATAA 1626 0.4053 MGRCRAASASGPADDDPNHRLKRKRAASETLPTGQGITNSKVSLYHCNYCNKDISGRIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADEEILLLEAIEMYGFGNWNEVAEYVGTKSKSQCIDHYNVVYMNSPCFPLPDLSHVMGKSRDELFAMVKGHEAKKEFSLTAELMLKEEAPFSDVVSYEETKKVEINNLEISRLTSVKNSSYLSQSNDDVKVEGESRSIGEKKPKLSGEDMLSITELSGYSFKREEFDVEYDNDAEQVLADMEFKNTDTEAEHQMKLHVLHIYSKRLNERKRRKHFVLERELLYPDPFEKSLLPEELQICQHYKVFMRFHSKEQHQDFLKNIIEELRLVRRIQDLQEARIAGCVTAGDGYRFIEQKRTKEAESSSCKESGQIGTSANTLQRPNNLKGELDSSPRGLQKGTAALFADSAIQAITKSLEEWDISGFAGAEFLSESEIKLCNEIRILPSHYLNMKQTISLEISKGSVTKKSDAHKLFKVEPSKVDRVYDMLVKKGVLQT 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00189 541 Gene3D - 99 150 - -
Viun6g00189 541 Gene3D - 38 93 IPR043145 -
Viun6g00189 541 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 44 536 - -
Viun6g00189 541 MobiDBLite consensus disorder prediction 230 249 - -
Viun6g00189 541 SMART zz_5 41 86 IPR000433 GO:0008270
Viun6g00189 541 MobiDBLite consensus disorder prediction 1 34 - -
Viun6g00189 541 SUPERFAMILY Homeodomain-like 98 151 IPR009057 -
Viun6g00189 541 ProSiteProfiles Zinc finger ZZ-type profile. 42 98 IPR000433 GO:0008270
Viun6g00189 541 CDD ZZ_ADA2 45 93 IPR041983 -
Viun6g00189 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 152 IPR017930 -
Viun6g00189 541 Pfam Myb-like DNA-binding domain 104 145 IPR001005 -
Viun6g00189 541 FunFam Transcriptional adapter 38 93 - -
Viun6g00189 541 FunFam Transcriptional adapter 2 98 150 - -
Viun6g00189 541 SUPERFAMILY Homeodomain-like 457 540 IPR009057 -
Viun6g00189 541 MobiDBLite consensus disorder prediction 410 432 - -
Viun6g00189 541 MobiDBLite consensus disorder prediction 235 249 - -
Viun6g00189 541 MobiDBLite consensus disorder prediction 408 438 - -
Viun6g00189 541 Pfam Zinc finger, ZZ type 45 85 IPR000433 GO:0008270
Viun6g00189 541 PIRSF Txn_adaptor_ADA2 33 541 IPR016827 GO:0003713|GO:0006357|GO:0035065
Viun6g00189 541 ProSiteProfiles SWIRM domain profile. 455 541 IPR007526 GO:0005515
Viun6g00189 541 Gene3D - 455 541 IPR036388 -
Viun6g00189 541 ProSitePatterns Zinc finger ZZ-type signature. 47 74 IPR000433 GO:0008270
Viun6g00189 541 CDD SANT 105 145 IPR001005 -
Viun6g00189 541 SUPERFAMILY RING/U-box 45 108 - -
Viun6g00189 541 ProSiteProfiles SANT domain profile. 100 152 IPR017884 -
Viun6g00189 541 ProSiteProfiles Myb-like domain profile. 105 148 IPR001005 -
Viun6g00189 541 FunFam Transcriptional adapter 2 456 540 - -
Viun6g00189 541 SMART sant 101 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00189 Viun-Chr6 4481094 4518002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00189 1 538 EF-hand Containing Proteins AT3G07740 52.941 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g00189 Myb_DNA-binding 6.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00189 K11314 - gmx:100779424 880.167