Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00153 ATGTTTTGTCAGGATAAAATTTCGTTTAACCATCTGGTGAAGTTATATGATCCTTTGGGCAAAAAATTTGAAATTTTTGTGGATACAGATGAGGGTGGAAGGATGGTGTTATTTGGATTTTGTCAGTATGTTGCATACTACGAGTTCGTTTCTCCTTGTTTCCTACATTTAAATTATGTAGGAAACAATGTCTTTGTTCACAGGATCTTCTCGGTGGAAGGAGTTGAAATTGATTATAGTAGAGATTTGCAGGCTGGTGGTAGCAACCAACTTGAAGTTGGTTCTGTTGATTGTGAGAAAATATTAAGTTCTTATGATGTTCATTCATCTTCTTTGTATCTGGATTCAAAATTTGTGAAAGAAGGCTTGGTGAAAGGGAGAAAAAACTATGTTCTGACGAATGGCCATGCACAATTCTGGAACTGCAAGATTCGATGGACAGGCAGGAGTTCATTTGAATGTTATCTGACTTGTGGTTGGAAGAAATACTGTCAAGAGAATGGGTTGGTTGCGGGAGATCGTGTTAGATTTATGGTGCAGACTGACCAAAGCAACGTCATCCAAATTCTGAAGATTTAG 579 0.3765 MFCQDKISFNHLVKLYDPLGKKFEIFVDTDEGGRMVLFGFCQYVAYYEFVSPCFLHLNYVGNNVFVHRIFSVEGVEIDYSRDLQAGGSNQLEVGSVDCEKILSSYDVHSSSLYLDSKFVKEGLVKGRKNYVLTNGHAQFWNCKIRWTGRSSFECYLTCGWKKYCQENGLVAGDRVRFMVQTDQSNVIQILKI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00153 192 Gene3D - 89 191 IPR015300 -
Viun6g00153 192 CDD B3_DNA 100 177 IPR003340 GO:0003677
Viun6g00153 192 Pfam B3 DNA binding domain 99 189 IPR003340 GO:0003677
Viun6g00153 192 ProSiteProfiles B3 DNA-binding domain profile. 97 192 IPR003340 GO:0003677
Viun6g00153 192 SUPERFAMILY DNA-binding pseudobarrel domain 99 187 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00153 Viun-Chr6 3397695 3398443 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00153 102 190 REM Transcription Factor Family AT4G31650 31.868 4.81e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun6g00153 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00153 - K08206 vun:114186973 404.445