Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00151 ATGGCTTCCAGAAAATCCGACAACCCTCAGTCTGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAGAGACACCACCCTAGAAACGTTTGTGAATTACTTCGAAAAGTATGGCGAGATAACGGACTCCGTTATCATGAAGGACCGTCAAACGGGTCGACCCAGGGGCTTCGGGTTCATCACCTACGCTGACCCCTCCGTCGTTGACCAAGTCATTCAGGAGAACCACATCATCAACGGGAAGCAGGTCGAGATCAAGAGGACCATTCCCAAGGGGTCGTCGCAGGCTAATGACTTCAAAACCAAGAAGATCTTCGTCGGCGGTATTCCAACATCAGTATCCGAAGATGAGTTCAAGAACTTCTTCTCCAAGTATGGGAAGGTGGTAGAGCATGAGATTATACGGGACCACACCACAAAGCGATCAAGGGGGTTTGGCTTTATAGTATTTGATAGTGAAAAGGTTGTGGATAATATTTTGGCAGATGGGAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCGAACCCAGCTTCTCTTGCTCCGTTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGATTCAGTGGATTTGGTGATTCTTATGGAAGTTTTGGTGGAAGTGGGTATGGTCCTGGTTCTTATAGGTCACTTGGTGGAGGATTTGGGGGTAGGCTTGGTGATTATGGTGGGTATGGGGCTGGAGATGACTTTGGTGGTAGTTTTGGGGGCTATGGTGGAAGTGGTGCTGGTGGCTATGCTGGCTTTCGAGGAGAATCATCCTTTGGCTACTCTAGTCGCTATGGATCATACATGGGTGGTCTTGGTGCTGGTTATGGCAGCAGTGGGTTAGCTGCATATGGACGAGGTGTTGGGGGCTATGGAAGCTACGGTGGTCCAGGAACTGGTGGGGGCTATGAATCAGGCCCGGCTGCTGGTTATGGTGGGGCTGGAGGTGGTGGAGTGTATCCCAGTAGGGGAAGCTATGGTGGCAGTAGTCGTTACCATCCATACACAAGATAG 1065 0.5023 MASRKSDNPQSGDGASPGKIFIGGLARDTTLETFVNYFEKYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDQVIQENHIINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDEFKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNPASLAPFASDSRARSYNDGFSGFGDSYGSFGGSGYGPGSYRSLGGGFGGRLGDYGGYGAGDDFGGSFGGYGGSGAGGYAGFRGESSFGYSSRYGSYMGGLGAGYGSSGLAAYGRGVGGYGSYGGPGTGGGYESGPAAGYGGAGGGGVYPSRGSYGGSSRYHPYTR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00151 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Viun6g00151 354 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Viun6g00151 354 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
Viun6g00151 354 Gene3D - 18 96 IPR012677 -
Viun6g00151 354 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Viun6g00151 354 SUPERFAMILY RNA-binding domain, RBD 8 98 IPR035979 GO:0003676
Viun6g00151 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Viun6g00151 354 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 354 - -
Viun6g00151 354 Gene3D - 97 218 IPR012677 -
Viun6g00151 354 SMART rrm1_1 19 90 IPR000504 GO:0003723
Viun6g00151 354 SMART rrm1_1 107 180 IPR000504 GO:0003723
Viun6g00151 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Viun6g00151 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00151 Viun-Chr6 3378024 3381932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00151 4 177 Eukaryotic Initiation Factors Gene Family AT1G71770 26.042 6.50e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00151 K12741 - gmx:100801373 395.586