Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00114 ATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAGGGCTAAGAATGGTTCACAAGATACTGAAAGGACGGTTCTTATTGTTCCTGATAACTTACCATCAGATTGTCCTCTGGCTAAGCCTTCAACATCTAAGCCTTCTACTTCTAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTCTGTTCGCTTCATCATCCAAAGCCGCACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCCAGGGTGTGATTCTGATTTAAGTAAAAGGGAAGTAAATCAGCACATTACTCGATCGGTTTCCGTTCCTGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTAATTTCGGCAAGATCACTTCTAACAACTGCTGAAGGCATCTCAACTCAGAATGCTTCGGGATCAGAGATTGTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTTGAGCTTGCAGAAGGAGGTAATACTCTTAGGATGGAGTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAAGAAGTCCTTAACCTCCCCGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTGCTCCGCAGCCAATGAATGCAGCAGGACCACAGCAGAGAGAAGTGCCTTCTTATAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTTCAGATATGGGCACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTAGGACTCCTTTCATCTATGATTGCTTCAACCATGGTGAACGGTAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACCATACTTAATGTTAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTCTGGTAACGGAATATGTTAGATGGAGAATGAGAAGACTGATTCAATCTTCTACCACACAGCAACTGCGTCGTGATCATGCACACCACCACCAAGAACATCAAAGACTGCAAAGGCCACAGCATGAGCAGCACCAATGA 1224 0.4216 MKSLLSERSFRAKNGSQDTERTVLIVPDNLPSDCPLAKPSTSKPSTSKPSTSRSLSLNKILFASSSKAAHSLPVTPTANSGAEIVQGRHPGCDSDLSKREVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTAEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVAPQPMNAAGPQQREVPSYRIWQDLSVLILVSMLAYFCFLEELLVSDMGTHALAISLPFSCVLGLLSSMIASTMVNGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQLRRDHAHHHQEHQRLQRPQHEQHQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00114 407 Pfam RING-variant domain 170 217 IPR011016 GO:0008270
Viun6g00114 407 SMART ringv_2 169 218 IPR011016 GO:0008270
Viun6g00114 407 SUPERFAMILY RING/U-box 166 221 - -
Viun6g00114 407 PANTHER OS02G0165000 PROTEIN 1 386 - -
Viun6g00114 407 MobiDBLite consensus disorder prediction 35 54 - -
Viun6g00114 407 MobiDBLite consensus disorder prediction 1 54 - -
Viun6g00114 407 ProSiteProfiles Zinc finger RING-CH-type profile. 162 224 IPR011016 GO:0008270
Viun6g00114 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 225 IPR013083 -
Viun6g00114 407 MobiDBLite consensus disorder prediction 1 23 - -
Viun6g00114 407 MobiDBLite consensus disorder prediction 386 407 - -
Viun6g00114 407 CDD RING_CH-C4HC3_MARCH 170 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00114 Viun-Chr6 2286013 2302310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00114 164 276 C3H Transcription Factor Family AT2G37950 33.333 4.76e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00114 - - pvu:PHAVU_006G002500g 724.931