Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00113 ATGGACAAGGCAGCTGCTGAACTTCAACGTGAGGCAGCAGATCCTGCTATTCTTCTCCACCATCATCAGTGTTGTGCTGGAAATGGGATAGGTGACAGTACCTCCTTGATTCCAGAGTCCAGAAGACCACACCTCTCCTCTCTGCAAATACCAGCAAGGTCAGTGGAAAATACATTATCCTCTTTCACAAAGACAGATGGTTCTACATTGATATCAAGTCCAGGTTCCAGTAGAGGACTTCCCCCAAGGCCAAATTCAGCCAGAGTCAAGTCCACTATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAGGGCTAAGAATGGTTCACAAGATACTGAAAGGACGGTTCTTATTGTTCCTGATAACTTACCATCAGATTGTCCTCTGGCTAAGCCTTCAACATCTAAGCCTTCTACTTCTAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTCTGTTCGCTTCATCATCCAAAGCCGCACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCCAGGGTGTGATTCTGATTTAAGTAAAAGGGAAGTAAATCAGCACATTACTCGATCGGTTTCCGTTCCTGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTAATTTCGGCAAGATCACTTCTAACAACTGCTGAAGGCATCTCAACTCAGAATGCTTCGGGATCAGAGATTGTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTTGAGCTTGCAGAAGGAGGTAATACTCTTAGGATGGAGTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAAGAAGTCCTTAACCTCCCCGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTGCTCCGCAGCCAATGAATGCAGCAGGACCACAGCAGAGAGAAGTGCCTTCTTATAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTTCAGATATGGGCACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTAGGACTCCTTTCATCTATGATTGCTTCAACCATGGTGAACGGTAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACCATACTTAATGTTAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTCTGGTAACGGAATATGTTAGATGGAGAATGAGAAGACTGATTCAATCTTCTACCACACAGCAACTGCGTCGTGATCATGCACACCACCACCAAGAACATCAAAGACTGCAAAGGCCACAGCATGAGCAGCACCAATGA 1500 0.4313 MDKAAAELQREAADPAILLHHHQCCAGNGIGDSTSLIPESRRPHLSSLQIPARSVENTLSSFTKTDGSTLISSPGSSRGLPPRPNSARVKSTMKSLLSERSFRAKNGSQDTERTVLIVPDNLPSDCPLAKPSTSKPSTSKPSTSRSLSLNKILFASSSKAAHSLPVTPTANSGAEIVQGRHPGCDSDLSKREVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTAEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVAPQPMNAAGPQQREVPSYRIWQDLSVLILVSMLAYFCFLEELLVSDMGTHALAISLPFSCVLGLLSSMIASTMVNGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQLRRDHAHHHQEHQRLQRPQHEQHQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00113 499 PANTHER OS02G0165000 PROTEIN 37 477 - -
Viun6g00113 499 SMART ringv_2 261 310 IPR011016 GO:0008270
Viun6g00113 499 MobiDBLite consensus disorder prediction 61 146 - -
Viun6g00113 499 MobiDBLite consensus disorder prediction 61 80 - -
Viun6g00113 499 MobiDBLite consensus disorder prediction 88 115 - -
Viun6g00113 499 SUPERFAMILY RING/U-box 258 313 - -
Viun6g00113 499 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Viun6g00113 499 MobiDBLite consensus disorder prediction 127 146 - -
Viun6g00113 499 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Viun6g00113 499 MobiDBLite consensus disorder prediction 478 499 - -
Viun6g00113 499 CDD RING_CH-C4HC3_MARCH 262 310 - -
Viun6g00113 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 317 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00113 Viun-Chr6 2285995 2302328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00113 256 368 C3H Transcription Factor Family AT2G37950 33.065 7.90e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00113 - - pvu:PHAVU_006G002500g 890.567