Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00111 ATGTGGGATAGTACTGAATCTCCTTCTCAAGCTCTTACCCAACTTTGTGCTTCTTCTAAAGTTAGCTTAGAAGATGATTTCATTAAGCTGCATCCTAGGAGTTCAATTGAAGGTCTAAAAGATTTTAAACAGGAAAGTACTTTTGTAGTAAAGGTTACTATCAAACATGTGCTAGATCATGATGATTGGTGGTATACAACATGTATCTGCAACAAAGCAGTTTATCCTGATTCCAAAATGTTTTTTTGTGAAAAGTGTAACAAGCATGTCATTAAGGTTACACCTAGGTATAAACTGAAACTTCATGTAATTGATGCTACAGATTCTACAACTTTTGTTGTATTTGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTCTGACATTCTTGACTTACAAGACAAGAACACTGCTGCTGGAGACTTGCCTAAAGAGTTTGAAGTCCTAATTGATAAAACCTATCTGTTCAAAGTTGAGTGCAAGAATGATTATAATAGCAAATTTGAACAATCATTCAGAGTTAAAAAAGTTTGCATGGATGAAAAAGTAATTGAAAGCTTTTCTGATGTTGAAATTAAGTCTTTGGATTTGTTGATCAAATTCACAAAAGAATCAAATGATGTTGAGACTCTAAGTGATGATTTGAACAATATAGTATCAAGCCATGTTCCTCCCGAAGAATCCTTGAAAACTAAAAATGTAATTGATGTTCAAATTCATGAGTTAACCCGCAAAGAATCATCTCAACTGGACAATCTTGATTTGGCTACTCAACCACCTGTTCCAAAACTTAAAAGACAAAGTCAATCTATGGTTCAAGAAAACAAGAAGATTCCAGAGTTTGGACATGTTGATCCAATATTTTTGGCTATTTTTGGTGAGGAATTAGGATCGGTTTGGCAGTTGGAAGATATTGAAGGGAATCAACATCAGTTAACTTTTAATATGGATGTGAATCATCCCGTTCTCACGGATGGTTGGTATAGCGACTTACAATCTGACTTTGCAGATTACGTTCGTAAACGTAGATTGAGGAGGTTGGAATTGCAGGGACGTCACAACACTTTCATTGTTCAATGTAAACTTCTGCTCTGTAATACACCTAAGAAGTCAAGTAATATTGGGAAGGGATGGAAGGACTTCTGCACATTCAATCGTTTGGAAGAAGGAGATATTCTTGTGTTTCTAGCTGACAAAGAAATGAAGAAATGTGCCTACATATACTAA 1230 0.352 MWDSTESPSQALTQLCASSKVSLEDDFIKLHPRSSIEGLKDFKQESTFVVKVTIKHVLDHDDWWYTTCICNKAVYPDSKMFFCEKCNKHVIKVTPRYKLKLHVIDATDSTTFVVFDRDASAMLKKSCSDILDLQDKNTAAGDLPKEFEVLIDKTYLFKVECKNDYNSKFEQSFRVKKVCMDEKVIESFSDVEIKSLDLLIKFTKESNDVETLSDDLNNIVSSHVPPEESLKTKNVIDVQIHELTRKESSQLDNLDLATQPPVPKLKRQSQSMVQENKKIPEFGHVDPIFLAIFGEELGSVWQLEDIEGNQHQLTFNMDVNHPVLTDGWYSDLQSDFADYVRKRRLRRLELQGRHNTFIVQCKLLLCNTPKKSSNIGKGWKDFCTFNRLEEGDILVFLADKEMKKCAYIY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00111 409 Gene3D - 26 188 IPR012340 -
Viun6g00111 409 SUPERFAMILY DNA-binding pseudobarrel domain 363 407 IPR015300 -
Viun6g00111 409 SUPERFAMILY Nucleic acid-binding proteins 37 179 IPR012340 -
Viun6g00111 409 Pfam Replication factor-A C terminal domain 49 178 IPR013955 -
Viun6g00111 409 ProSiteProfiles B3 DNA-binding domain profile. 375 409 IPR003340 GO:0003677
Viun6g00111 409 CDD RPA1_DBD_C 48 178 IPR047192 -
Viun6g00111 409 Gene3D - 300 408 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00111 Viun-Chr6 2163970 2168105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00111 48 178 Core DNA Replication Machinery Family AT5G08020 25.185 1.41e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00111 - - vun:114188287 835.484