LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g00102	ATGGCTGATGGACTGGAGCATCCATCAGTTGTTCAGAAGCTAGCTGGACAATCTTACCTTGTCTCCAGGCTTAGCCCCAACTTCCACTCCGGGAATTATTCTGCAACTGGTATTAACCTCAATGGAGGACTGCACACTTCTGGGTTAGCTGCCTTGTCATTTGTATCTCCAATTACTTCACATGCTCCAGCAGAGAAAGGACCAGGTGCTTTTATGGTGGATTTTCTAATAGGCGGAGTATCTGCTACTGTATCAAAGACAACTGCTGCTCCAATTGAGAGAGTAAAATTGCTCATTCAAAATCAGGATGAGATGATCAAAAGTGGTCGGTTATCTGAACCATACAAGGGAATTGGTGATTGTTTTGCTCCAACCATGAAGGATGAGGGTGTGATTGCTCTTTGGAGAGGCAATACTGCCAATGTTATCAGATACTTCCCCACTCAGGCTTGA	453	0.4459	MADGLEHPSVVQKLAGQSYLVSRLSPNFHSGNYSATGINLNGGLHTSGLAALSFVSPITSHAPAEKGPGAFMVDFLIGGVSATVSKTTAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFAPTMKDEGVIALWRGNTANVIRYFPTQA	150

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g00102	150	Pfam	Mitochondrial carrier protein	71	150	IPR018108	-
	Viun6g00102	150	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	69	150	IPR018108	-
	Viun6g00102	150	PANTHER	ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED	68	150	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Viun6g00102	150	PRINTS	Adenine nucleotide translocator signature	115	136	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Viun6g00102	150	PRINTS	Adenine nucleotide translocator signature	71	83	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Viun6g00102	150	SUPERFAMILY	Mitochondrial carrier	71	150	IPR023395	-
	Viun6g00102	150	PRINTS	Mitochondrial carrier protein signature	137	150	IPR002067	GO:0055085
	Viun6g00102	150	PRINTS	Mitochondrial carrier protein signature	87	101	IPR002067	GO:0055085
	Viun6g00102	150	PRINTS	Mitochondrial carrier protein signature	74	87	IPR002067	GO:0055085
	Viun6g00102	150	Gene3D	Mitochondrial carrier domain	68	150	IPR023395	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g00102	Viun-Chr6	1827513	1828411	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g00102	3	150	Antiporters	AT4G28390	64.968	1.01e-66	205

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g00102	K05863		-	gmx:100802974	256.529