Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00071 ATGAGTATACCACAAGCAGCTGCTGCTGCTGCTTCTGCTTCTGCTTCTGCTGCAAGCAGTCCTCCTCCACATCTGTATCCACAGGAGTTACAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCTATACTCTTCTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTTCTCCTTATTTGCTTCCAAGGACCATTCCCATTAATCCACCAACCACCACTCCCTATCATTCATCACCCTGTCAATTCCTCGATAAGCTTCCAAGGGTTTTATTTGATGAGGATTTGCTAGCAAGAGATTCCTTGTGTTGTGTTTGTTTGGGGGAGTTTGAGGTGAAGGAAGAGGTGGTGCAGATTCCTTATTGCAAGCACGTGTTCCACTTGGATTGCATACATCACTGGCTCCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACTACCAAGTTCATCAATCCAGCACCGTCTATTAATATTATATCAGACCCACCCCAGCATGCTGCTATCTTTTCAGACTCTCCATCATTCCCACCTCACTCACAACATCATCATCAACTTCCTGCTTCCTCAAATTCTCCTAATTTCCCCAGGGAATGA 636 0.4434 MSIPQAAAAAASASASAASSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSSPYLLPRTIPINPPTTTPYHSSPCQFLDKLPRVLFDEDLLARDSLCCVCLGEFEVKEEVVQIPYCKHVFHLDCIHHWLQSNSTCPLCRCSIIPTTTKFINPAPSINIISDPPQHAAIFSDSPSFPPHSQHHHQLPASSNSPNFPRE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00071 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 158 IPR013083 -
Viun6g00071 211 SMART ring_2 111 152 IPR001841 -
Viun6g00071 211 MobiDBLite consensus disorder prediction 187 211 - -
Viun6g00071 211 SUPERFAMILY RING/U-box 90 160 - -
Viun6g00071 211 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Viun6g00071 211 CDD RING-H2_EL5-like 111 153 - -
Viun6g00071 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 172 - -
Viun6g00071 211 MobiDBLite consensus disorder prediction 184 211 - -
Viun6g00071 211 Pfam Ring finger domain 111 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00071 Viun-Chr6 1283105 1285016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00071 31 158 C3H Transcription Factor Family AT4G10150 41.791 4.55e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00071 K19039 - gmx:100794298 265.388