Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00057 ATGCCTCGGGGAAAAGCAAATTCTTCATCAACTGCTAAGCCATCTGACTCTGAGAAGCTAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGAAAATGATCCAGAAGAAGCTATGGAAGAAGAAATTGAGTATGAAGAAGTAGAAGAAGAAGTGGAAGTGGAAAAGATAGAAGAGGAGGGGGGTCCAGAGGAGGTAGAGGTAGAAGAAGAGGAAGAGGAAGAGGAGGAAGAAGAGGAAGAAGAGATTGAAGAAGTGGATGAAGAGGATGCAATGCAAAACCATAGCAGTGATGAAGCAAAGGTGGAAGATGAGGACGAGAAAAAAAAACATGCCAAACTCCTTGCTCTTCCTCCTCATGGGTTTGAAGTATACATTGGTGGCATTCCTCATGATGTCTCAAATGAGGATTTGAAATCTTTTTGCGAGAGAATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAGCATTCCAGCGAGAACAAGGGATTCAATTTTGTAACATTTAGAAGTGTGGACTTGGCTTCTAAAGCCATCAAAGAGCTGAATAATACAGAATTTAAGGGTAAAAAAATAAAACGTTCTACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGTTGGGGTGTGGAAGATCTGAGGAAGATTGTTTCTGAGGTTGGACCTAGAGTTATTGGTGTGGAACTAGTCAAGGATATGAAGAACACCAATAACAATCGTGGCTTTGTTTTTATTGACTATTATAATAGTGCGTGTGCTGAGTATTCTAAGCTAAAGATGATGAGCCCAACATTTAAGCTAAGTGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGTTGGCAGTATATGTGAAGAACCTGCCGAAGAATGTAACTCAAAAGCAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATAACTAAGGTGGTTCTTCCACCAGCAAAATCTGGACAAGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCCAATGTTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAAGTTTTAGAGTGCTCTTTGGCAAAGCCACAGTCTGATCAAAAGTTTGGAGGGTCAAACACACAGAAGTCAGGTTCAGGATTACTTCCAAGTTATCCACAACATGTCGGTTATGGTTTGGTTGGCAGTGCCTATGGTGCACTAGGTGCGGGATATCATGCTCCAGGTCTTGCACAGGTTTCTGATCAAGGAAGTGTGCCAATTAATACAACAAGTTTTGTACATAAGGAAAATCATATGTGA 1332 0.4092 MPRGKANSSSTAKPSDSEKLVESDEKVDFEEENDPEEAMEEEIEYEEVEEEVEVEKIEEEGGPEEVEVEEEEEEEEEEEEEEIEEVDEEDAMQNHSSDEAKVEDEDEKKKHAKLLALPPHGFEVYIGGIPHDVSNEDLKSFCERIGEVAEVRVMKGKHSSENKGFNFVTFRSVDLASKAIKELNNTEFKGKKIKRSTSQAKHRLFIGNVPRSWGVEDLRKIVSEVGPRVIGVELVKDMKNTNNNRGFVFIDYYNSACAEYSKLKMMSPTFKLSENAPTVSWADPKNADSSAASQLAVYVKNLPKNVTQKQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNVMKALKNTERYELEGQVLECSLAKPQSDQKFGGSNTQKSGSGLLPSYPQHVGYGLVGSAYGALGAGYHAPGLAQVSDQGSVPINTTSFVHKENHM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00057 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 284 IPR000504 GO:0003723
Viun6g00057 443 MobiDBLite consensus disorder prediction 93 109 - -
Viun6g00057 443 CDD RRM_SF 124 194 - -
Viun6g00057 443 FunFam RNA recognition motif-containing protein 21 202 - -
Viun6g00057 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 366 IPR000504 GO:0003723
Viun6g00057 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 264 IPR000504 GO:0003723
Viun6g00057 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 194 IPR000504 GO:0003723
Viun6g00057 443 SUPERFAMILY RNA-binding domain, RBD 288 390 IPR035979 GO:0003676
Viun6g00057 443 Gene3D - 62 195 IPR012677 -
Viun6g00057 443 Coils Coil 38 60 - -
Viun6g00057 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Viun6g00057 443 Gene3D - 285 391 IPR012677 -
Viun6g00057 443 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 383 - -
Viun6g00057 443 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 285 393 - -
Viun6g00057 443 MobiDBLite consensus disorder prediction 1 16 - -
Viun6g00057 443 MobiDBLite consensus disorder prediction 1 109 - -
Viun6g00057 443 SUPERFAMILY RNA-binding domain, RBD 119 285 IPR035979 GO:0003676
Viun6g00057 443 Gene3D - 201 283 IPR012677 -
Viun6g00057 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Viun6g00057 443 Coils Coil 65 92 - -
Viun6g00057 443 SMART rrm1_1 203 280 IPR000504 GO:0003723
Viun6g00057 443 SMART rrm1_1 123 196 IPR000504 GO:0003723
Viun6g00057 443 SMART rrm1_1 296 369 IPR000504 GO:0003723
Viun6g00057 443 MobiDBLite consensus disorder prediction 27 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00057 Viun-Chr6 1144806 1149771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00057 124 378 Eukaryotic Initiation Factors Gene Family AT4G34110 22.887 1.72e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00057 K13161 - gmx:100806658 570.852