Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00001 ATGAAAGGGAAGATGAGAGAATTTATAGATTCGGCATCCTCATCGGTGGTCTCAAACGCAAACGCGCTTCAGCAGCGTCTACAGTTCATTCTGCAGAGCCGTCAGGAATGGTGGGTGTATGCTATATTCTGGCAAGCCACCAAAGACAGCGACTCCCGTGACACACTGGAATATGGGGACGGCTTCTTCATGGGCACAAAGGGAAGAGAGGGAACGGAAGTCAGAATGCCGGAGGAACAAACGAGGAACCACGTGAACGACATCGAATGGTTCTACAGGGTGTCGCAAACTCGGTCGTATGCCGCCGGGGACGGTGTGGTGGGGTGTGCCTTCGGCTCGGGGGTGGATGTTTGGTTGAGCGGGGTGAAGGAGTTTGAAGTGAAGGAGTGTGACGAGAGAGTGGGGGAAGCACGGAGGCATGGGATCCAGACATTAGTGTGCGTGTCGGTGGCACGAGGGATCCTTGAGCTGGGTTCGCATGAGGTGCTGAAGCTGGATTATGGGGTTCTGCAACTGGCAAAATCGGTGTTAGAGGAGGGGGAGAGTGGGAGTGAGAATCCGGTGAGCAAGCAGTGGGTGGTTCCAGGCAAGGAGGAAGAGAGAGAGAGGAGAAGAGAATTGGAGGGATCGTCGACGGAGTCTTCAGGGCCTTCTGATCATGATGCGGAAGGCAATAACAACAACGTTCCCACGATGGGAAGAAGGGCGGGGAGGGTACGTGAGGCGCTTCCCGTAAATCACGTGGAGGCCGAGAGGCAGCGGCGAGAGAAGCTGAATCAGAGATTCTATGCTCTTCGCTCTGCTGTCCCTAACGTGTCCAAGATGGACAAGGCCTCCCTGCTTTCGGACGCCGTTGATTATATAAATGAACTGAAGGCCAAAATCAGCAACCTCCAGGTGGCGTTCCAGGCCAAGCAGGAAGGTCCGGCAGAGCAGGTCCAACCCCAATCCATTCCCGCACCCTCCTCTGCAACTACTGAGATGAGAGTTGAAGTCCAGATCTTGGGCTCCGAGGCCATGATAAGGGTGCAGAGCCTGAACGTTAACCACCCCTCTGCCCGGCTGATGGATGCTCTCAGGGACGTCAATTTGCAAGTTCTGCATGCCACAATCTCCAACATCAAAGAGATGATGCTTCAAGACGTCGTCGTCAGAGTTCCCCATCACCTCACCACCCAAGAGGCTCTCCAAACTGCTATTAGGCGCAGACTTTGA 1215 0.5465 MKGKMREFIDSASSSVVSNANALQQRLQFILQSRQEWWVYAIFWQATKDSDSRDTLEYGDGFFMGTKGREGTEVRMPEEQTRNHVNDIEWFYRVSQTRSYAAGDGVVGCAFGSGVDVWLSGVKEFEVKECDERVGEARRHGIQTLVCVSVARGILELGSHEVLKLDYGVLQLAKSVLEEGESGSENPVSKQWVVPGKEEERERRRELEGSSTESSGPSDHDAEGNNNNVPTMGRRAGRVREALPVNHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVDYINELKAKISNLQVAFQAKQEGPAEQVQPQSIPAPSSATTEMRVEVQILGSEAMIRVQSLNVNHPSARLMDALRDVNLQVLHATISNIKEMMLQDVVVRVPHHLTTQEALQTAIRRRL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00001 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 312 IPR036638 GO:0046983
Viun6g00001 404 MobiDBLite consensus disorder prediction 194 210 - -
Viun6g00001 404 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 23 176 IPR025610 -
Viun6g00001 404 Pfam Helix-loop-helix DNA-binding domain 246 291 IPR011598 GO:0046983
Viun6g00001 404 Gene3D - 239 307 IPR036638 GO:0046983
Viun6g00001 404 SMART finulus 248 297 IPR011598 GO:0046983
Viun6g00001 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 291 IPR011598 GO:0046983
Viun6g00001 404 PANTHER MYC 15 402 IPR045084 GO:0003700|GO:0006355
Viun6g00001 404 MobiDBLite consensus disorder prediction 211 232 - -
Viun6g00001 404 MobiDBLite consensus disorder prediction 178 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00001 Viun-Chr6 35892 37916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00001 23 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.053 2.14e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun6g00001 bHLH-MYC_N 3.7e-31 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00001 - K13422 pvu:PHAVU_004G090300g 639.417