Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04183 ATGGGGGCGCGCTCTGCTTCGGTGGTGCGCGCACCATTCAAGAATGTGAAGCCGAAGCTGTGGTTGAGCGTGGTTAAGGGTAACGTAGTTGTGTTGGTATTGGCATCAATATTAATATCATCAAGCTGGTGCACATCAGCGAAAGCCATGTATTCTGACGCGGAGGCGCTGGTGAAGTTGAAGAAGTCGTTCACAAACACAGTGGCCTTGAAAAGTTGGGATCCAACCACAAACTCAAAACCACCTTGCTCTGGAAACATTCCGAACTGGGTGGGGTTATTTTGTTTGAGGGACAAGGTTTGGGGGTTGCGACTCGAGAACATGGGACTAACAGGCACAATCGACATAATGACTCTGGCTTCCATCCCCGCTCTCCGCTCGGTTAGCCTGATGAACAACACCTTTGTGGGTCCCTTGCCTAGCGTAAGGATGCTGCCAAATCTCAAGGCCCTCTACCTCTCCTTCAATCATTTCTCAGGACAGATTCCAGACGATGAATTTAAGGGTTTGCATAAATTGAGGAAACTCTATTTGGCCAATAATGAGTTCACAGGTCAAATTCCTTCTTCCATTGCTACCTTGCCTTCTCTCATCATCCTCAGGCTCGACTCAAACAAGTTTCAAGGTCCAATCCCCCGTTTCCTACACGTTAATACTACTAGTAATTACACTTTGAAGATCATCAACTTTTCTAACAATCAGTTGGAGGGTCCCATTCCGCCCAGTCTAACCACCTTCGGCGCCACCCCATTTAGCGGGAACCCTGGACTATGCGGGGCGCCCCTCCAGAATGAGTGCCAAGAGGTAGCCACACCATCCAAAATGCGTCTTCTAAAAATTTTACTAGCTATTGTGACGAGTGCATTGATAGTAGCCATCCTGGTTATAGTGTTGGTGATATGTCGGTTGAGGTCACAGACATCCCAACTGCAACAACAATCCGCAGTAGAAACGTTGCAGGGCCATGTCCAGCAGGCTCCTCCCATTTATGTCAAAACTAAAAGCCTAGCCGATCACTACGATGGTAGTCCCAGGCAGGCGTCATCAGGTCAGGGTCTTGGACGTCCACGTTCCAGGAGAGGTGAACCAGCCAAACTCACATTCCTCAGGCATCAAGAACCTATGTTTGATTTGCAGGATTTGCTGAGGTCCTCCGCTGAAATTCTTGGAAGTGCAGCATTTGGTTCCTCCTACAAGGCCGTCATTTTAGACGGTTACCCCGTTGTTGTCAAGAGGTACAAGCATATGAACAATGTGCCCAGAGAGGAGTTCCAGGAGCACATGAGAAGACTAGCCATTCTCAACCATCCCAATCTTCTCCCTCTCCTCGCCTTTTATTATAAAAGGGAAGAAAAGCTTCTCCTCTCTGCCTTTGTTCACAACGGTTGCTTGGCCAGTCATCTTCACGGCAATCATAACTCCCAAAAGCGGGGACTTGACTGGCCAACTCGCTTGAAAATCGTGAAAGGTATAGCCAGGGGTTTGGCTTACCTATACAGTGCACTCCCAAGCGTAATTGTGCCTCATGGTCATCTCAAATCTTCCAACGTCCTTTTGGATGAATCCTTCGAGCCCCTTCTCACTGATTATGCCCTCAGCCCCGTCATCAACCTTGACCATGCCCAAAAAATTATCATGCCTTACAAATCTCCAGAGTATGCTCAACTTGGGCGCATTACAAAGAAGACTGATGTGTGGAGTTTTGGAATTCTGATTCTGGAGATCTTGACCGGCAAATTCCCTGAGAACTGTCACACACTTCGTTATAATACTGATTCTGACATAGCCAGTTGGGTAAATACCCTGATTACTGAGAAGCGCACCAGTGACGTGTTTGACGTAGAGATGGGAGGAATTGGAAATTGTAAAGCTGAATTACTCAAACTCCTAAAGATTGGCTTGAGTTGTTGTGAGGAGAATGTTGAAAGAAGGCTTGATATCAAGGAAGCTCTTGAGCAAATTGAAGACTTGAAAGAGAGCGAAAATGATGCTATTGGAGAATACTCCTCCACTGAAAGAAATACTTATAGAGCTGTCTGA 2040 0.4691 MGARSASVVRAPFKNVKPKLWLSVVKGNVVVLVLASILISSSWCTSAKAMYSDAEALVKLKKSFTNTVALKSWDPTTNSKPPCSGNIPNWVGLFCLRDKVWGLRLENMGLTGTIDIMTLASIPALRSVSLMNNTFVGPLPSVRMLPNLKALYLSFNHFSGQIPDDEFKGLHKLRKLYLANNEFTGQIPSSIATLPSLIILRLDSNKFQGPIPRFLHVNTTSNYTLKIINFSNNQLEGPIPPSLTTFGATPFSGNPGLCGAPLQNECQEVATPSKMRLLKILLAIVTSALIVAILVIVLVICRLRSQTSQLQQQSAVETLQGHVQQAPPIYVKTKSLADHYDGSPRQASSGQGLGRPRSRRGEPAKLTFLRHQEPMFDLQDLLRSSAEILGSAAFGSSYKAVILDGYPVVVKRYKHMNNVPREEFQEHMRRLAILNHPNLLPLLAFYYKREEKLLLSAFVHNGCLASHLHGNHNSQKRGLDWPTRLKIVKGIARGLAYLYSALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPVINLDHAQKIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENCHTLRYNTDSDIASWVNTLITEKRTSDVFDVEMGGIGNCKAELLKLLKIGLSCCEENVERRLDIKEALEQIEDLKESENDAIGEYSSTERNTYRAV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04183 679 SUPERFAMILY Protein kinase-like (PK-like) 386 657 IPR011009 -
Viun5g04183 679 Pfam Leucine rich repeat 146 207 IPR001611 GO:0005515
Viun5g04183 679 Gene3D Phosphorylase Kinase; domain 1 356 458 - -
Viun5g04183 679 SUPERFAMILY L domain-like 89 263 - -
Viun5g04183 679 Pfam Leucine rich repeat N-terminal domain 52 95 IPR013210 -
Viun5g04183 679 Pfam Protein tyrosine and serine/threonine kinase 387 652 IPR001245 GO:0004672|GO:0006468
Viun5g04183 679 Coils Coil 640 667 - -
Viun5g04183 679 Gene3D Ribonuclease Inhibitor 50 220 IPR032675 -
Viun5g04183 679 ProSiteProfiles Protein kinase domain profile. 383 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04183 679 Gene3D Ribonuclease Inhibitor 224 263 IPR032675 -
Viun5g04183 679 FunFam Pollen receptor-like kinase 1 459 667 - -
Viun5g04183 679 FunFam Nuclear pore complex protein NUP107 50 213 - -
Viun5g04183 679 Gene3D Transferase(Phosphotransferase) domain 1 459 668 - -
Viun5g04183 679 MobiDBLite consensus disorder prediction 340 360 - -
Viun5g04183 679 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 37 661 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04183 Viun-Chr5 48655579 48658491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04183 52 670 Receptor kinase-like Gene Family AT5G35390 48.346 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun5g04183 PK_Tyr_Ser-Thr 2.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04183 - - pvu:PHAVU_005G185800g 1093.95