Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04168 ATGCAATTAGCGTCGAATGGCGACAACGAAGCATGTTCAGAAAGCGAACCCATCTTGAATCACCTCCATCTTCATTTGCAACCTCCTGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTGCTCCCAACCATGATGTCGACCATGATTTACAAAATGTTCGGGTTGATGAGACTTCTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGACATTGGAGGAGAAGATTTAATTGCTCCGTGCCATTGCAAAGGTACGCAAAAGTACGTTCACAGATCATGTCTGGATAATTGGAGATCCACCAAGGAGGGCTTCGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCCGACCGTTGGTGGTTGAGATTAAAATTCCAGTTCCTTGTTGCTAGGGATCATGCGTTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGCTTCTTCATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTATCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAGCATGTAAAGAATGTGCCTGAACTTGATCCTAGTCACGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 774 0.4276 MQLASNGDNEACSESEPILNHLHLHLQPPGESSFSCEIIPIAPNHDVDHDLQNVRVDETSHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04168 257 SUPERFAMILY RING/U-box 65 121 - -
Viun5g04168 257 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 190 257 - -
Viun5g04168 257 SMART ringv_2 69 118 IPR011016 GO:0008270
Viun5g04168 257 CDD RING_CH-C4HC3_MARCH 70 118 - -
Viun5g04168 257 ProSiteProfiles Zinc finger RING-CH-type profile. 62 124 IPR011016 GO:0008270
Viun5g04168 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 122 IPR013083 -
Viun5g04168 257 Pfam RING-variant domain 70 117 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04168 Viun-Chr5 48569997 48575054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04168 31 216 C3H Transcription Factor Family AT1G50440 67.016 7.07e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04168 - - vun:114185559 535.413