Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04166 ATGGCATCAATTGATATATATAATATGATCTTATTGAACGTTGTCCAATTAGGTTTAGAAGAACTTACCCTAACTATCTATCTTTCGCCATTGCAAAATTCTAATTCTGTTGCTATTTCCTCTCCATTTCTTTCTCATCAATTTGCAGCGTCGAATGGCGACAACGAAGCATGTTCAGAAAGCGAACCCATCTTGAATCACCTCCATCTTCATTTGCAACCTCCTGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTGCTCCCAACCATGATGTCGACCATGATTTACAAAATGTTCGGGTTGATGAGACTTCTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGACATTGGAGGAGAAGATTTAATTGCTCCGTGCCATTGCAAAGGTACGCAAAAGTACGTTCACAGATCATGTCTGGATAATTGGAGATCCACCAAGGAGGGCTTCGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCCGACCGTTGGTGGTTGAGATTAAAATTCCAGTTCCTTGTTGCTAGGGATCATGCGTTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGCTTCTTCATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTATCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAGCATGTAAAGAATGTGCCTGAACTTGATCCTAGTCACGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 912 0.4112 MASIDIYNMILLNVVQLGLEELTLTIYLSPLQNSNSVAISSPFLSHQFAASNGDNEACSESEPILNHLHLHLQPPGESSFSCEIIPIAPNHDVDHDLQNVRVDETSHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04166 303 CDD RING_CH-C4HC3_MARCH 116 164 - -
Viun5g04166 303 Pfam RING-variant domain 116 163 IPR011016 GO:0008270
Viun5g04166 303 SUPERFAMILY RING/U-box 111 167 - -
Viun5g04166 303 ProSiteProfiles Zinc finger RING-CH-type profile. 108 170 IPR011016 GO:0008270
Viun5g04166 303 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 236 303 - -
Viun5g04166 303 SMART ringv_2 115 164 IPR011016 GO:0008270
Viun5g04166 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04166 Viun-Chr5 48569943 48574635 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04166 77 262 C3H Transcription Factor Family AT1G50440 67.016 7.43e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04166 - - vun:114185559 626.706