Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04162 ATGCATTTGGAACCAATACATATCCTCGGAAAAAGGGAAAAAGTTTCTGGGGGTTTTCTATGGGAATCTTGGCAAGATGTTACCCTTATAATATTGATTATAGCAGCTGTGGTGTCATTGGTACTTGGAATAAAAACAGAGGGCCTGGAAGAAGGGTGGTACGACGGAGGAAGCATTGCTTTAGCTGTTTTTCTTGTCATCATAGTTACAGCTGTAAGTGATTATCGGCAATCTCTGCAGTTTCAGAACTTGAATGCAGAAAAAGAGAACATAAAATTAGAGGTCATTAGAGGTGGCAGAACAATACAAATATCGATATTTGATGTTGTTGTTGGTGATCTAGTGCCTCTTAAAATAGGAGATCAGGTTCCCGCCGATGGAGTTGTTATCACTGGTCACTCTCTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTATTCACAAGGATCATAAAGCACCTTTTTTGATGTCTGGTTGCAAAGTAGTAGATGGAATTGGCGCTATGCTGGTAACTGGTGTTGGTATAAATACCGAGTGGGGACTGTTGATGGCAACTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTTCGTTTGAATGGAGTGGCTACTTTTATTGGCATAGTGGGGCTTACTGTAGCTGTTTGTGTCCTTGCTGTCCTCGTAGGAAGATACTTCTCTGGCTACACGAAAGATTTAGATGGAAAAGTACAATTTGTTGCTGGAGAGACCAGTACTAGTGAAATAATAGACGGAGTCATCAAAATTTTTACCATTGCAGTGAGTGTGAATTCTGAATTTTGTTTAGAAACATCTTTTGTAGTAGTTTTTTCAACTAATTATATAGCCATGCAGGTAACAATTGTGGTGGTTGCAGTGCCCGAAGGTCTACCTTTAGCAGTTATGTTAACTTTGGCATATTCGATGCGGAAAATGATGGCAGACAAAGCTTTGGTGCGAAGGTTGTCAGCGTGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGAACGCTGACCTTAAATGAGATGACTGTAGTAGAGGCATATGTTGGGAGGAAGAAACTAAATCAACCAGATGACTTGACAAAAGTGAATCCGGAAGTTCTCTCTCTGATAAATGAGGGTATTGCACAAAATACGACTGGCAATGTTTTTGTGCCTAAGGATGGTGGAGAGATGGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAATTTTGATTTTATTAGATCAAATTCAACAATTCTCCATGTCTTCCCCTTCAACTCTGCGAAAAAGAGAGGTGGTGTTGCTGTGAAACTGCCGGACAATGTAGTACATGTACATTGGAAAGGAGCTGCGGAGATAGTTCTAGGAACATGTACTCAATATCTTGATTCTGATGGTCACTTGAAATCTATTGAAGAAGAGAAGATATTCTTCAAGAATGGTATCGAAGACATGGCTGCACAGAGCTTGCGTTGTGTTGCCATTGCATATAGATCGTATGATATCGAAAAAGTTCCATCTAATGAGGAGGAATTAAACCAGTGGTCCTTACCAGAACACGAGTTGGTCTTGCTTGCTATCGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAGGAAGCTGTGAAAGTATGCACTGAAGCTGGCGTTAAGGTACGCATGGTTACCGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTGGAGTGTGGAATACTGACGTCTACTGAAGAGGCTGTTGAGCCAAATATAATTGAAGGGAAGTCATTCCGTGAACTATCTGAAATCGAAAGGGAACAAGTTGCAAAAAAAATAACAGTTATGGGGAGGTCTTCTCCTAATGACAAGTTGATGCTTGTGCAAGCACTACGTAAAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATCGGCCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATTATCTTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGTTGGGGTCGTTCTGTATATGCAAATATCCAGAAATTTATTCAGTTCCAGCTCACTGTTAATGTTGCGGCTCTTGTAATAAATGTTGTTGCATCAATATCTTCTGGTGATGTTCCCTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGAGCTCTTGCGCTGGCTACGGAACCTCCAACAGACAGCCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACAAATATCATGTGGAGGAACTTGCTCGTGCAGGCCCTCTATCAAGTCATTGTTCTTCTGATTCTTAACTTCTGTGGTGAAAGTATTCTACGTAATGAGGATTCCACAGTCCATACCATACAAGTGAAGAATACTTTAATTTTCAACGCATTCGTCTTTAGCCAATTTTACAATGCTTCAACTCAGATATTCAACGAGTTCAATGCTCGAAAACCAGAAGAGATGAATGTGTTCCAGGGAGTGACTAAGAACCGTCTTTTCATGGGAATTGTTGGAATGACATTTGTGCTTCAGATAATCATCATCGAGTTCCTTGGAAAATTCACAACCACGGTGAGGCTTAGCTGGAAGTTGTGGCTTGCCTCTCTTTGTATTGGGTTTTTAAGCTGGCCTCTTGCCGTTGTTGGAAAGTTGATCCCAGTTCCCAGAACACCACTGTCCCGATATTTCTCCAAGTCACTCAGAAAATTAAAAAAGTCCAAGTCCCATGCACAACGATAG 2826 0.4154 MHLEPIHILGKREKVSGGFLWESWQDVTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIALAVFLVIIVTAVSDYRQSLQFQNLNAEKENIKLEVIRGGRTIQISIFDVVVGDLVPLKIGDQVPADGVVITGHSLAIDESSMTGESKIIHKDHKAPFLMSGCKVVDGIGAMLVTGVGINTEWGLLMATISEDTGEETPLQVRLNGVATFIGIVGLTVAVCVLAVLVGRYFSGYTKDLDGKVQFVAGETSTSEIIDGVIKIFTIAVSVNSEFCLETSFVVVFSTNYIAMQVTIVVVAVPEGLPLAVMLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAYVGRKKLNQPDDLTKVNPEVLSLINEGIAQNTTGNVFVPKDGGEMEVSGSPTEKAILSWAVKLGMNFDFIRSNSTILHVFPFNSAKKRGGVAVKLPDNVVHVHWKGAAEIVLGTCTQYLDSDGHLKSIEEEKIFFKNGIEDMAAQSLRCVAIAYRSYDIEKVPSNEEELNQWSLPEHELVLLAIVGIKDPCRPGVKEAVKVCTEAGVKVRMVTGDNLQTAKAIALECGILTSTEEAVEPNIIEGKSFRELSEIEREQVAKKITVMGRSSPNDKLMLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVASISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLITNIMWRNLLVQALYQVIVLLILNFCGESILRNEDSTVHTIQVKNTLIFNAFVFSQFYNASTQIFNEFNARKPEEMNVFQGVTKNRLFMGIVGMTFVLQIIIIEFLGKFTTTVRLSWKLWLASLCIGFLSWPLAVVGKLIPVPRTPLSRYFSKSLRKLKKSKSHAQR 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04162 941 FunFam Calcium-transporting ATPase 349 546 - -
Viun5g04162 941 NCBIfam calcium-translocating P-type ATPase, PMCA-type 266 916 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Viun5g04162 941 SFLD p-type atpase 321 698 IPR044492 -
Viun5g04162 941 CDD P-type_ATPase_Ca_PMCA-like 19 779 - -
Viun5g04162 941 Gene3D - 254 904 - -
Viun5g04162 941 Pfam E1-E2 ATPase 92 226 - -
Viun5g04162 941 SFLD C1.7: P-type atpase like 321 698 - -
Viun5g04162 941 Gene3D - 349 546 IPR023299 GO:0000166
Viun5g04162 941 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 917 IPR023298 -
Viun5g04162 941 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 346 543 IPR023299 GO:0000166
Viun5g04162 941 FunFam Calcium-transporting ATPase 539 691 - -
Viun5g04162 941 SUPERFAMILY Calcium ATPase, transduction domain A 92 187 IPR008250 -
Viun5g04162 941 FunFam Calcium-transporting ATPase 22 79 - -
Viun5g04162 941 Gene3D - 20 190 - -
Viun5g04162 941 PANTHER CATION TRANSPORTING ATPASE 19 916 - -
Viun5g04162 941 ProSitePatterns E1-E2 ATPases phosphorylation site. 341 347 IPR018303 -
Viun5g04162 941 Gene3D - 336 691 IPR023214 -
Viun5g04162 941 NCBIfam HAD-IC family P-type ATPase 260 368 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun5g04162 941 NCBIfam HAD-IC family P-type ATPase 613 726 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun5g04162 941 SUPERFAMILY HAD-like 337 751 IPR036412 -
Viun5g04162 941 FunFam Calcium-transporting ATPase 663 918 - -
Viun5g04162 941 Pfam Cation transporting ATPase, C-terminus 731 914 IPR006068 -
Viun5g04162 941 Gene3D - 22 229 - -
Viun5g04162 941 PRINTS P-type cation-transporting ATPase superfamily signature 138 152 - -
Viun5g04162 941 PRINTS P-type cation-transporting ATPase superfamily signature 670 682 - -
Viun5g04162 941 PRINTS P-type cation-transporting ATPase superfamily signature 561 571 - -
Viun5g04162 941 PRINTS P-type cation-transporting ATPase superfamily signature 539 550 - -
Viun5g04162 941 PRINTS P-type cation-transporting ATPase superfamily signature 646 665 - -
Viun5g04162 941 PRINTS P-type cation-transporting ATPase superfamily signature 339 353 - -
Viun5g04162 941 Pfam haloacid dehalogenase-like hydrolase 336 660 - -
Viun5g04162 941 FunFam Calcium-transporting ATPase 69 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04162 Viun-Chr5 48535435 48551074 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04162 19 937 Primary Pumps ATPases AT3G21180 75.326 0.0 1394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04162 K01537 - gmx:100817367 1546.95